barSeed - Barley Seed Development Database

Probe ABC11741

Source Contig ABC11741

barSeed

Links

Affymetrix Source Sequence (1467 bp)

>ABC11741 1467
CGCATTCGCTACCTTGCTTCCTGCTGACGTGCCTTGGCCTCCCCGCTTCCCACTCCGCTC
CGCTGCCACCGACGACAGGAGCGAGCAGAGGACGCGATGCAGCAGCAGCAGCAGCAGCTG
CAGGCGCCGCCCTCGTGGGTGGCCGGGTCCGACGCCGCCCGCCCTGCTCCCGCCACCTTC
GACGAGGCGTCCATGGAGCGGAGCAAGAGCTTCGTCAAGGCGCTCCAGGAGCTCAAGAAC
CTGCGCCCGCAGCTCTACTCCGCCGCGGAGTACTGCGAGAAGTCGTACCTCCACAGCGAG
CAGAAGCATATCGTGCTGGACAACTTGAAGGATTATGCTGTCAGGGCCCTGGTTAACGCG
GTCGACCACCTTGGCACAGTTGCCTACAAATTGACGGACCTGTATGAACAACAGGTTTCA
GAGGTCTCAACTGTTGAGCTGAAAGTAGCATCCTTGAACCAGCAAGTCCTGACTTGCCAA
ACTTACACCGATAAAGAAGGCCTTAGGCAGCAGCAGATGATTGGAAACGCTACAAGACAC
CACAAACATTACATCGTACCAACTGCGGGAAACAAAAGAATGCAAGCCTTTTCTGAGATG
CAAACAGACGCCGAGTTTGACTTAAAGCCTAAACCTTATCCCTCAGAGAAGACTCTTTTC
TGGCACTTGGCTTCAGAGAAGAACACCAAAACCAATGGAGAACACCAATCTGAATTGGGC
CACGGGGAAACGAAAACTACTAAGCCTACATCCAGTGGTGGGTTCAACCTTACAGGTAAG
GAATTGTCTGTGTCTCCCTTGCCCAAGCGTCTGCAGTCGAATGTGAGCAGCTCAGACATT
GTTACGCGTAACATTGGCATGAAGGATCAGCCTGGTGCAAGGCATTTGGCATCATTCAGT
TCTCTCGACAACCCAAGAGGGCGTCAAATCCAAAAGGCTCCAGTCCGCACCAAAAGTATG
CTAGCTGCTTTCTTTGTCAGGCACAGGTCCGGAAAGATGAAAAACGTCTCCGTTCGTTGA
TCAACTACAAACCTGCAGTTTGCTCAAGCCCGCCCCACCATGAAGTACATGCAACAAACT
CAGTCCACATCTCTTATATGCGCATCTTGTATGTTAGTGGTCTAGAGATAGACCTTATTT
TGATGCCCTTTTCATCTCTAAATTGATGACAAAATTATATGGATATAGTCAGTCTTAAAC
CACCGTGGAAGTTTTCAGTATAAATGAATGAGATGGAATGCATATGGGTATGTCAATGCT
AAGTTCCTTTCATTTATATATAGATCATAAAGCGTATCTGTAAAGAAAACAACAGAAGAT
TTGTATGTCCATGAATGTATGTTCATAGTGTTTTTTTCTGAAAAACTATTGCCACTGGGT
GATACGGGTGGAAGGAAGAAACCTTCAATTTGTATCTTGACATGCCTATAACTTGATGAG
GTACTTACGTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_60540.2	1500	0.0	188 - 1500	100	1313 / 1313	None	ABC11741
MLOC_60540.1	1709	0.0	1134 - 1709	100	576 / 576	None	ABC11741
MLOC_60540.3	458	1e-149	165 - 458	99	292 / 294	None	ABC11741
MLOC_60541.1	635	7e-117	342 - 570	100	229 / 229	None	ABC11741
MLOC_63838.1	2056	4e-74	925 - 1421	77	385 / 500	CUST_41220_PI390587928 CUST_9795_PI390587928 CUST_30948_PI390587928	ABC11667 ABC11741
AK252170.1	1143	1e-70	205 - 545	81	278 / 343	CUST_41220_PI390587928	ABC11667 ABC11741
MLOC_63838.2	1694	1e-55	481 - 932	76	344 / 455	CUST_41220_PI390587928	ABC11667 ABC11741
MLOC_63838.3	861	1e-55	408 - 859	76	344 / 455	CUST_41220_PI390587928	ABC11667 ABC11741