barSeed - Barley Seed Development Database

Probe CUST_9719_PI390587928

Source Contig U35_373

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9719_PI390587928	Hv_44K_v2	TGTCGTGGTACTGGCACTTTGTTTTGATGTCTCTCGATGTTAAAACTTAGATTATATATC	2752	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361008	1917	2e-24	1835 - 1894	100	60 / 60	plus	ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00685 ABC00827 ABC00901 ABC01003 ABC36959
MLOC	MLOC_20444.1	1330	2e-24	718 - 777	100	60 / 60	minus	ABC00297 ABC00331 ABC00413 ABC00536 ABC00685 ABC00827 ABC00901 ABC01003 ABC36959
MLOC	AK250137.1	2948	7e-23	2779 - 2838	98	59 / 60	plus	ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00626 ABC00685 ABC00827 ABC00901 ABC01003 ABC36959
MLOC	MLOC_64334.1	2298	7e-23	1546 - 1605	98	59 / 60	minus	ABC00297 ABC00331 ABC00413 ABC00536 ABC00685 ABC00827 ABC00901 ABC01003 ABC36959
JLOC1	JLOC1_14165.1	1005	8e-25	393 - 452	100	60 / 60	minus
JLOC1	JLOC1_42232.1	958	4e-23	206 - 265	98	59 / 60	minus
Harvest21	ABC00901	2854	3e-25	2753 - 2812	100	60 / 60	plus	ABC00901
Harvest21	ABC00827	857	1e-23	24 - 83	98	59 / 60	minus	ABC00827
Harvest21	ABC00677	1978	1e-23	1871 - 1930	98	59 / 60	plus
Harvest35	U35_38622	674	3e-25	39 - 98	100	60 / 60	minus
Harvest35	U35_373	2860	3e-25	2753 - 2812	100	60 / 60	plus
Harvest35	U35_141	859	1e-23	775 - 834	98	59 / 60	plus

Contig Sequence (2860 bp)

>U35_373 2860 Hv_44K_v2
ATTCTCTTCTTCCGGGAGCGCCGCCGCTTCCTCATCCCTCACCTCTCCGCTCGGTAGCCG
GAAGCGAAACCCCAAGAAAGTATAGTCCCAGCGTGACATTCAAAAGCAGTCAAGATGGTG
AAGTTTACAGCGGAGGAGCTCCGTGGAATTATGGATAAAAAGAACAATATCCGTAACATG
TCTGTTATTGCTCATGTTGACCATGGCAAGTCTACTCTTACGGATTCCCTTGTGGCAGCT
GCTGGGATCATTGCCCAGGAAGTAGCTGGTGATGTCCGCATGACTGATACCCGTGCAGAC
GAGGCAGAACGTGGTATTACAATCAAATCCACGGGTATCTCTCTTTTCTATCAGATGACT
CCTGAATCACTCGAGATGTACAAGGGCGACAGGGATGGTGATGAGTACCTGATCAACCTT
ATCGATTCACCTGGCCACGTTGACTTTTCTTCGGAAGTCACAGCTGCTCTTCGTATCACT
GATGGTGCTTTGGTGGTTGTCGACTGTATTGAGGGTGTGTGTGTGCAGACTGAAACTGTG
CTGCGCCAAGCTCTAGGTGAGAGGATTAGGCCTGTTCTTACTGTGAACAAGATGGACAGA
TGCTTCCTTGAGCTTCAAGTGGAAGGCGAGGAAGCATACCAGACTTTCTCCCGTGTCATT
GAAAATGCCAATGTCATCATGGCAACATATGAAGATGTTCTCCTTGGTGATGTCCAAGTG
TACCCAGAGAAGGGGACTGTTGCATTCTCTGCTGGTTTGCATGGGTGGGCTTTCACCCTT
ACAAACTTTGCTAAGATGTATGCCTCCAAGTTTGGAGTTGATGAGGCAAAGATGATGGAG
AGGCTGTGGGGTGAGAACTTCTTTGACCCAGCCACAAAGAAATGGACCTCCAAGAACACT
GGCACAGCTACCTGCAAGAGAGGTTTTGTTCAGTTCTGCTATGAGCCAATCAAGCAAATC
ATTGCCACCTGCATGAATGATCAGAAGGATAAGTTGTGGCCTATGTTGAAGAAGCTTGGT
GTGACCATGAAGAATGATGAGAAGGACTTGATGGGCAAGGCTCTCATGAAGCGTGTGATG
CAAACTTGGCTGCCTGCCAGTCGTGCTCTGCTTGAGATGATGATATTTCACCTCCCCTCT
CCTTCAAAGGCACAGAGGTATCGTGTGGAGAACTTATATGAGGGTCCCCTTGATGATGTA
TATGCAAACGCTATCAGAAACTGTGACCCAGATGGTCCTCTTATGTTGTATGTCTCCAAG
ATGATTCCAGCATCTGACAAGGGTAGATTCTTTGCCTTTGGACGTGTCTTTGCTGGGAGA
GTCGCAACTGGCATGAAGGTCCGGATCATGGGTCCCAACTTTGTTCCTGGCCAGAAGAAG
GATCTATATGTGAAGAGTGTCCAGCGTACTGTTATCTGGATGGGAAAGAAGCAAGAGTCT
GTTGAGGATGTTCCCTGTGGTAACACTGTTGCTTTGGTTGGTTTGGATCAGTTCATCACA
AAGAATGCAACCCTAACAAATGAGAAGGAAGTTGATGCCTGCCCAATCAGGGCCATGAAG
TTCTCTGTGTCCCCTGTTGTGCGTGTTGCTGTTCAGTGCAAGGTGGCATCTGATCTTCCT
AAGCTTGTTGAGGGTTTGAAGCGGCTGGCGAAGTCTGATCCTATGGTTCTCTGTAGCATT
GAAGAGTCTGGTGAGCATATTATTGCTGGAGCTGGAGAGCTTCACCTTGAAATCTGTTTG
AAGGATCTGCAGGAGGACTTCATGGGTGGTGCTGAAATTATTGTTTCCCCTCCTGTCGTC
TCCTTCCGTGAGACTGTTCTTGAGAAGTCCTGCCGCACTGTCATGAGCAAGTCCCCTAAC
AAGCATAACCGTCTTTACATGGAAGCTCGCCCATTGGAGGAGGGATTGGCTGAGGCTATT
GATGATGGCCGCATTGGCCCACGTGATGATCCCAAGGTGCGCTCCAAGATCCTCTCTGAG
GAGTTTGGCTGGGACAAGGATCTTGCCAAGAAGATTTGGTGCTTTGGACCTGAAACGACT
GGCCCGAACATGGTTGTTGACATGTGTAAGGGAGTGCAGTATCTCAATGAAATCAAGGAC
TCTGTTGTGGCTGGGTTCCAATGGGCATCAAAGGAAGGTGCATTGGCTGAGGAGAACATG
CGTGGCATTTGCTTTGAGGTCTGTGATGTTGTTCTGCACACTGATGCTATTCACAGGGGT
GGTGGCCAGGTCATCCCAACAGCCAGGAGGGTCATTTACGCTTCTCAGCTCACTGCTAAG
CCAAGGCTGCTGGAGCCTGTGTACCTGGTTGAGATCCAGGCCCCCGAGAATGCACTTGGT
GGTATCTATGGTGTTTTGAATCAGAAGAGAGGGCATGTGTTTGAGGAGATGCAGAGGCCT
GGTACCCCGCTGTACAACATCAAGGCTTACCTCCCGGTCATCGAGTCCTTCGGGTTCTCA
AGTACCCTCAGGGCAGCTACATCTGGCCAGGCTTTCCCCCAGTGTGTGTTTGACCACTGG
GACATCATGTCTTCTGATCCTCTGGAGGCCGGCTCCCAGTCTGCCACCCTTGTCACGGAG
ATCCGCAAGCGCAAGGGTCTCAAGGAACAGATGACCCCTCTATCTGATTTCGAGGACAAG
CTCTGAACTTTTGATTCTGTTACATGGTCTAGTTTGCTTTATGCTGCTAAGAGAGCTGCG
CTATTTTCTGTCTATTGAGTCCGTCGCTGTATTGCTATTGCAATGTCCTATCTGTCGTGG
TACTGGCACTTTGTTTTGATGTCTCTCGATGTTAAAACTTAGATTATATATCTGTTATGA
TACTGGCATTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_373 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g32030.1	844	protein\|elongation factor, putative, expressed
Brachypodium v1_2	Bradi3g44160.1	844
Arabidopsis v10	AT1G56070.1	843	\| Symbols: LOS1 \| Ribosomal protein S5/Elongation factor G/III/V family protein \| chr1:20968245-20971077 REVERSE LENGTH=843