barSeed - Barley Seed Development Database

Probe CUST_9670_PI390587928

Source Contig U35_41272

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9670_PI390587928	Hv_44K_v2	GCACTGCATAGTCTATGATGCCAAAATTAGTGTTCCATTTTTTAGTAGATATGGACATGA	196	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355775	1429	3e-21	1245 - 1304	97	58 / 60	plus	ABC08511 ABC15629 ABC38338 ABC39738 ABC40364 ABC40947 ABC47127
Harvest21	ABC08511	614	6e-22	144 - 203	97	58 / 60	minus	ABC08511
Harvest35	U35_41272	703	3e-25	197 - 256	100	60 / 60	minus
Harvest35	U35_47213	643	1e-23	155 - 214	98	59 / 60	minus
Harvest35	U35_48125	486	6e-22	159 - 218	97	58 / 60	minus
Harvest35	U35_17790	1397	6e-22	1197 - 1256	97	58 / 60	plus

Contig Sequence (703 bp)

>U35_41272 703 Hv_44K_v2
TTTTTTTTTTTTTTTTTACAAATTTCATGATCCATATATCATATTTCCATAGCATCCATA
CATCCAAAATTCCATAGCATCCATATATACATATAGTTCCATAGCATCCATACATACATA
GCTCCATAGCAAATATAATACACAACGATACTTTGCGGGCATTAGTAAGTAATATTTGAC
ACTAAAACAAATGCCTTCATGTCCATATCTACTAAAAAATGGAACACTAATTTTGGCATC
ATAGACTATGCAGTGCTTGCTATCTGCTCAAGCACTGTGTGAAAAAAATGCTAACATTTT
AGATAGCAGTAAAACGAGACTCGGAAGAATTCAACACTGTGATGTGTGGAGGTGACCACG
GGCAAATTCAGCACTTGGTTGTCTGTCAAGTAAAGTTCGAATGGGTCCATGAAACATCGC
GAAAAGCGAATGAGATTCTTTCAGTATTCCTTGCAATGCCCACAAGCGAACTAAGATATT
TTTACAGCAAGCCTGGGGAAGACACGGCGCCTCTCTGTACTGAATCTACAACAGAAACTT
GAACTGGGTGTGGCGCTGGAGCCTGTTGGGGTTGTCGCCGTAGCGGCTGTCGTCGGGCCT
CACGCTCGGCTCCACATAGCAGAGATCAGCACGCGGTTGAGTGTTGGTCTTGGTTCCATT
CACAAGTTCATCGTCTTTGTCTCNGTCTTCCTACTCTACTCGT

Homology of Contig U35_41272 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None