barSeed - Barley Seed Development Database

Probe CUST_9566_PI390587928

Source Contig U35_37842

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9566_PI390587928	Hv_44K_v2	ACAGACTGATAATCTCTTTTAGTCCTATCAGTGATAGTTAATAGTTGCTCTGTTTCATGC	97	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_31594.1	908	2e-24	178 - 237	100	60 / 60	plus	ABC15824 ABC15825 ABC18126
MLOC	MLOC_31594.2	1186	2e-24	178 - 237	100	60 / 60	plus	ABC15824 ABC15825 ABC18126
JLOC1	JLOC1_20727.5	920	8e-25	178 - 237	100	60 / 60	plus
JLOC1	JLOC1_20727.1	1179	8e-25	178 - 237	100	60 / 60	plus
Harvest35	U35_37842	631	3e-25	98 - 157	100	60 / 60	minus

Contig Sequence (631 bp)

>U35_37842 631 Hv_44K_v2
TTTTTTTTTTTTTTTTTCTGTTTAAAGTTTTGTATTTGCGATGCGAATGTCATTCATATA
ACATAAAACAAACATGAAGTGCTACTTTTTTTATTAGGCATGAAACAGAGCAACTATTAA
CTATCACTGATAGGACTAAAAGAGATTATCAGTCTGTCGTACATTTCACCTGAACTGCAG
CCATTTTTGTGAAGCCTTTTATTTTGCACAAGAATACAAAGACTGCAAGCATCTAGACAT
GTACTGCATTACATTGTCACACATGAAAAGGAGACACTTCCTATTGGTTCGGCGAGAACA
TGAGTCCAGGTACTTTCCTCTGCTCCACAAGTTCTAGTTACCGAAAAGAAAAGACAAACA
GGACAAGACATATCAGAGACTGGATAAACTAACAAAACTGACAAACAAGACACAGGGACT
ACATAAATAAGCAGAACTGACAAACAAGAAATAGCAGAGACTGGATAAAGTAGCAAAACT
GACAAACAAGACATATCAAGGACTGGATAAACTAGCAAAACTGACAAACAAGACATAGCA
CTGACTAGATNAACTAGCAATACTGACAAAAAAGACATATCACAGACTGGATAAACTAGN
CATACTGACAAAGAAGACCACAATTTGACGA

Homology of Contig U35_37842 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None