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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_9543_PI390587928Hv_44K_v2GTTCGCGGTCTAGTCCGAGGAGCTCCTCGTCGCTTCCGTGGCTTAGTGACACGGACATTC347GeneList: None
MasterList: None



Probe Values

This probe has no recorded values for this experiment





Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK3581829942e-24531 - 59010060 / 60plus ABC02318 ABC02324 ABC14241
MLOCAK36620426592e-24553 - 61210060 / 60plus ABC02318 ABC02324 ABC14241
MLOCMLOC_3199.12132e-2440 - 9910060 / 60plus ABC14241
MLOCMLOC_48761.16367e-23370 - 4299859 / 60minus ABC14241
MLOCMLOC_30244.12527e-2356 - 1159859 / 60plus ABC14241
MLOCMLOC_29787.13257e-2331 - 909859 / 60plus ABC14241
MLOCMLOC_33696.12613e-21111 - 1709758 / 60plus ABC14241
JLOC1JLOC1_1915.12088e-2538 - 9710060 / 60plus
JLOC1JLOC1_20027.12534e-2356 - 1159859 / 60plus
Harvest21ABC517594073e-25348 - 40710060 / 60plus
Harvest21ABC142405871e-23484 - 5439859 / 60plus
Harvest21ABC142419676e-22242 - 3019758 / 60plusABC14241
Harvest35U35_498294073e-25348 - 40710060 / 60plus
Harvest35U35_2123912096e-22484 - 5439758 / 60plus



Contig Sequence (407 bp)

>U35_49829 407 Hv_44K_v2
CACGCCCTCCGTCGATGGTGTCGATGTCGCCCTCGGCGGCGGACGGAGGGGGCGATGGGG
ACGAGGAGTTGACGGCGAAGTCATCTCTAGCAGCTCTACCTCGAGGGCAACGCGCTCGCC
GGTGGCCTCGAGTTCCTGGAGGCACTGGTGATCCGCGACATGGGGCGGATCGGGGTTGCC
GTCCCGAGCACCCTCTCGCGGCTCACGCGCCTCAAGCAGGCTACCTCGAGGGCAACGCGC
TCGCCGGCGGCGTACCCGGGAAGGTGTTGTCTAGGATGAGCTCCCTCTGCTACCCCTCGC
TCGCCGGCAACCGGCTGGAGGGCACGCTGCCGCCGGAGCTCGGGGACGTTCGCGGTCTAG
TCCGAGGAGCTCCTCGTCGCTTCCGTGGCTTAGTGACACGGACATTC



Homology of Contig U35_49829 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None