barSeed - Barley Seed Development Database

Probe CUST_9380_PI390587928

Source Contig U35_18331

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9380_PI390587928	Hv_44K_v2	CAAGTACGTTTAGTAGACTTGTGTGTATGAGCAACACAAAAGGATGTACATTATATACTG	1472	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364394	3569	7e-23	3483 - 3542	98	59 / 60	plus	ABC00014 ABC00040 ABC00041 ABC00075 ABC00082 ABC00094 ABC00102 ABC00105 ABC00106 ABC00124 ABC00126 ABC00130 ABC00135 ABC00136 ABC00141 ABC00176 ABC00186 ABC00196 ABC00201 ABC00204 ABC00338 ABC00349 ABC00484 ABC00570 ABC00657 ABC00660 ABC00669 ABC00672 ABC00676 ABC00684 ABC00701 ABC00787 ABC00971 ABC02587 ABC10055 ABC19867 ABC31599 ABC32138 ABC47839
MLOC	MLOC_54122.2	4021	7e-23	2225 - 2284	98	59 / 60	plus	None
MLOC	MLOC_54122.1	4060	7e-23	2240 - 2299	98	59 / 60	plus	None
MLOC	MLOC_54122.3	3762	7e-23	2130 - 2189	98	59 / 60	plus	None
MLOC	MLOC_54121.1	2915	7e-23	1012 - 1071	98	59 / 60	plus	None
JLOC1	JLOC1_34827.4	3572	4e-23	1794 - 1853	98	59 / 60	minus
JLOC1	JLOC1_34827.3	4412	4e-23	2634 - 2693	98	59 / 60	minus
JLOC1	JLOC1_34827.2	3503	4e-23	1725 - 1784	98	59 / 60	minus
JLOC1	JLOC1_34827.1	3405	4e-23	1627 - 1686	98	59 / 60	minus
JLOC1	JLOC1_34826.1	1939	4e-23	1012 - 1071	98	59 / 60	plus
Harvest35	U35_18331	1604	3e-25	1473 - 1532	100	60 / 60	plus

Contig Sequence (1604 bp)

>U35_18331 1604 Hv_44K_v2
CCGTCTCCCTCTCCCTCCCTTTCCTTGTAACCTTCGCAAGAGGAACAGCGGCAGCAACAA
GAGCGCCAGACCAGACCAGGCCAGCAGAGCTGCCCCCCTCCCCCATTGCCGCCCTCCTCC
CCATCTCCTCGCCCGCGAAACCTCGAGCGTGGAGCACGTACGCGCAAGACAAGGCGCGTG
CATTTCGGTTTGCCCGGGGAGCCGGCTGTCGGCGGGGAGGCTTGTTCGCCGGCGGGCGGC
GTTTCTTGGCGGCCGGACCGGTCGTTCGGCGGGATGAACAGCGGCGACGCCGCCGGGTCG
AGCTCCGGCGGATCCGGGGACGGGGGCGCGCCCAGGAGGGCCTCCAGGAAGCCCAAGTAT
TCCAAGTTCACGCAGCAGGAGCTCCCGGCTTGCAAACCGATTCTCACCCCAAAATGGGTC
ATTTCTGTGTTTATTCTTGTTGGCGCCATTTTTGTCCCCATAGGCGTCGCTTCTTTGCTA
TCTTCACAAAAGGTCGTTGAGATTGTTGATCGATACGATGATGCATGCGTCCCGTCTAAT
GTTACCGACAAACTTGCCTACATCCAGAACTCAACGATACCTAAAACCTGCCAAAGGACG
CTGACGGTCCCTAAGGATATGAAGCAGCCGATTTTTGTGTATTACCAGTTGAATAACTTC
TACCAGAATCATAGGAGATATGTTAAGAGCCGGAATGACCAGCAGCTAAGAGATGCTAGT
AAGGCAAACGAGACCACTCTTTGTGACCCCGAGAAGACCACAAAAGATGGATTGGCTATT
GTTCCATGTGGTCTGATTGCATGGAGCACATTCAATGATACATATTCCTTCCAACACAAG
AGTAGGAACTTATCAGTCGACAAGAATGACATCTCTTGGAAGAGTGACAGGGATCACAAA
TTTGGAAGTGATGTCTTCCCAAAGAACTTTCAGAAAGGTCCTCTTATAGGTGGAAAAACA
CTCAACGAATCTATACCGCTGAGTGAGCAAGAGGACCTTATTGTTTGGATGAGAACTGCC
GCGCTTCCTACATTCAGAAAACTGTATGGTAGGATATATGTTGACCTCAAAGAAAATGAC
ACCATTACTGTTACGCTGGACAACAATTACAACACGTACAGCTTTGGTGGCAAAAAGAGT
TTGGTGCTTTCTACTTCAACCTGGCTTGGTGGAAAGAATGATTTTCTTGGGCTTGCATAC
CTCACTGTTGGTGGACTCTGTTTCTTCCTGGCATTTGCATTCACCTTACTCTACTTGATA
AAACCAAGAAAATTAGGAGACAACAATTACTTGTCATGGAACAAAAACTCTGCAGGCCAT
TGATACACTCTGAAAGTTGATTTCCGCATTCAACATCAAACGATGGCCTTATGGTTAAAT
TGTATCTTGTACGAAAATAGCAATTTTTGTTTTCAAGCTGTTGTCATGTACGTGTATCAA
GTAGACTTGATTTTTTTTTTACAAGCTGTTGTCAAGTACGTTTAGTAGACTTGTGTGTAT
GAGCAACACAAAAGGATGTACATTATATACTGAAATATAGATACATGGTTCTTTTGTTGA
AAATTGCATTCCCCATGAGTGAAATTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_18331 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g07750.1	351	0.0	protein\|cell cycle control protein, putative, expressed
Brachypodium v1_2	Bradi3g05450.1	350	0.0
Arabidopsis v10	AT1G54320.1	349	2e-147	LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein \| chr1:20275732-20277793 REVERSE LENGTH=349