barSeed - Barley Seed Development Database

Probe ABC10055

Source Contig ABC10055

barSeed

Links

Affymetrix Source Sequence (1530 bp)

>ABC10055 1530
TCCCTCCCTCCCTCCCCTAACCGCCAGCGGAGGCCGCCTCTTCCGGCGTGGCCGGGGCAG
CTCGCGGGGTTTACCGGGCTCCGGACCGGCGCGGCGGCGAAGCGGCGGGCGGGGACCATC
ATGGACGGGGGGGGGGCCGGCGCTAGCAACGGCGGATCCGGGGCCGATGCGGACGCCGCC
AGGAGGAACACCAGGATGCCCAAGTATTCCAAGTTCACGCAGCAGGAGCTGCCGGCCTGT
AAGCCGATCCTTACTCCAAAATGGGTTGTCTCGGTTTTTTTCCTTGTCGGCGTCATCTTT
GTCCCAGTTGGTGTCGTCTCGTTACTAGCTGCACAAGATGTTGTTGAGATCATTGATCGG
TATGATCATGCATGTGTCCCACCTAACATGACTGATAATAAGCTTGCGTACATCCAGAAT
GAGACTATATCTAAAGAGTGCACAAGGACTCTCACGGTTACAAAGGAGATGAAGCAGCCA
ATTTACGTGTACTACCAACTTGACAACTTTTATCAGAATCATAGGAGGTATGTGAAGAGC
CGAAATGATGCACAACTAAGAGATTCTAAGAAGTCAAATACGACCACCTCATGTGAACCT
GAGAGGTTCACGGCTGATGGAAAACCAATTGTTCCTTGTGGTCTGATTGCTTGGAGTTTG
TTTAATGACACATATAGCTTCAGTCGTGGTAAAGACAACTTGACAGTAAACAAGAAGGAC
ATCTCCTGGAAAAGTGATAGGGAGCACAAATTTGCCAAAAATGTCTACCCAAGCAACTTC
CAGAATGGTGCGCTCATAGGTGGTAAAAAGCTTAACTCGAGTATACCGCTGAGCGAACAG
GAGGATCTTATCGTTTGGATGCGGACTGCAGCGCTTCCTACATTCAGAAAGTTATATGGG
AGGATATACGTTGATCTCAAGGCGAATGATACCATAACTGTGAAGCTGAGTAACAACTAC
AATACATATAGCTTTGGTGGCAAGAAGAAGTTGGTCCTTTCCACTGCAACCTGGCTTGGA
GGAAAGAATGATTTTCTTGGGTTTGCATACCTCATAGTTGGTGGGCTCTGTATTTTCTTG
GCATTTGCATTCACCTTGCTATACTTGATAAAGCCAAGGAAACTGGGGGATCACAACTAC
CTGTCCTGGAACAGGAACCCCGCAGGCCGCTAAGGGTGTTCTCAAACTCGATACGGCGTA
CAATCAGTGCCCGCCTTCGACTAGTCGAAATGTATCATCATGCCCTAAATGATACTACCT
GAGATTGCCCAGTAGCTCTAGACCACTTGTGTGTGTGTACATTTTAACAAGGGACCATTG
TTCTTTTGTTTTCTTTGTTTGTTGTGTGTTAGGCTGCATACATATATCAGCCGTGAAGGG
GAAATACTACGGACGGAGTGTACTATGGAGTTTCGTATTTCACGGTATACGGGATTTGTT
AACTCTCCTGTACTATAATGGATTGTTGAGCCTATGCTATTCCAGACAGTGCATGCCTTG
GGACACCGAAGTTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK362876	1609	0.0	102 - 1609	99	1496 / 1508	None	ABC10055
MLOC_38263.1	1588	0.0	178 - 1588	99	1404 / 1411	CUST_42116_PI390587928	ABC10055
MLOC_38263.2	1417	3e-76	1241 - 1417	96	170 / 177	None	ABC10055
AK364394	3569	4e-179	2316 - 3328	78	801 / 1026	CUST_9380_PI390587928 CUST_9528_PI390587928 CUST_1700_PI390587928	ABC00014 ABC00040 ABC00041 ABC00075 ABC00082 ABC00094 ABC00102 ABC00105 ABC00106 ABC00124 ABC00126 ABC00130 ABC00135 ABC00136 ABC00141 ABC00176 ABC00186 ABC00196 ABC00201 ABC00204 ABC00338 ABC00349 ABC00484 ABC00570 ABC00657 ABC00660 ABC00669 ABC00672 ABC00676 ABC00684 ABC00701 ABC00787 ABC00971 ABC02587 ABC10055 ABC19867 ABC31599 ABC32138 ABC47839