barSeed - Barley Seed Development Database

Probe CUST_8867_PI390587928

Source Contig U35_31972

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8867_PI390587928	Hv_44K_v2	GCATGTCCATCATGAACTCCTTCATCAACGACATCTTTGAGAAGCTCGCCGGCGAGTCGG	255	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250385.1	631	6e-24	301 - 359	100	59 / 59	plus	ABC01121 ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01132 ABC01133 ABC01136 ABC01137 ABC01138 ABC01140 ABC01141 ABC01142 ABC01143 ABC01147 ABC01150 ABC01151 ABC01154 ABC01156 ABC01157 ABC01158 ABC01161 ABC01162 ABC01164 ABC01166 ABC01167 ABC01169 ABC01177 ABC01179 ABC01180 ABC01181 ABC01184 ABC16131 ABC30555 ABC31601 ABC31617 ABC31619 ABC31825 ABC37479 ABC49951
MLOC	AK375339	659	7e-23	307 - 363	100	57 / 57	plus	ABC01121 ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01132 ABC01133 ABC01136 ABC01137 ABC01138 ABC01140 ABC01141 ABC01142 ABC01143 ABC01147 ABC01150 ABC01151 ABC01154 ABC01156 ABC01157 ABC01158 ABC01161 ABC01162 ABC01164 ABC01166 ABC01167 ABC01169 ABC01177 ABC01179 ABC01180 ABC01181 ABC01184 ABC30555 ABC31601 ABC31617 ABC31619 ABC31825 ABC37479 ABC49951
MLOC	MLOC_6467.1	459	7e-23	41 - 97	100	57 / 57	minus	ABC01121 ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01132 ABC01133 ABC01136 ABC01137 ABC01138 ABC01140 ABC01141 ABC01142 ABC01143 ABC01147 ABC01151 ABC01154 ABC01156 ABC01157 ABC01158 ABC01161 ABC01162 ABC01164 ABC01166 ABC01167 ABC01169 ABC01177 ABC01179 ABC01180 ABC01181 ABC01184 ABC30555 ABC31601 ABC31617 ABC49951
MLOC	AK375744	731	3e-22	293 - 351	98	58 / 59	plus	ABC01121 ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01132 ABC01133 ABC01136 ABC01137 ABC01138 ABC01140 ABC01141 ABC01142 ABC01143 ABC01147 ABC01150 ABC01151 ABC01154 ABC01156 ABC01157 ABC01158 ABC01161 ABC01162 ABC01164 ABC01166 ABC01167 ABC01169 ABC01177 ABC01179 ABC01180 ABC01181 ABC01184 ABC16131 ABC30555 ABC31601 ABC31617 ABC31619 ABC31825 ABC37479 ABC49951
MLOC	AK374993	602	3e-22	272 - 330	98	58 / 59	plus	ABC01121 ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01132 ABC01133 ABC01136 ABC01137 ABC01138 ABC01140 ABC01141 ABC01142 ABC01143 ABC01147 ABC01150 ABC01151 ABC01154 ABC01156 ABC01157 ABC01158 ABC01161 ABC01162 ABC01164 ABC01166 ABC01167 ABC01169 ABC01177 ABC01179 ABC01180 ABC01181 ABC01184 ABC16131 ABC30555 ABC31601 ABC31617 ABC31619 ABC31825 ABC37479 ABC49951
MLOC	AK356272	753	3e-22	332 - 390	98	58 / 59	plus	ABC01121 ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01132 ABC01133 ABC01136 ABC01137 ABC01138 ABC01140 ABC01141 ABC01142 ABC01143 ABC01146 ABC01147 ABC01150 ABC01151 ABC01154 ABC01156 ABC01157 ABC01158 ABC01161 ABC01162 ABC01164 ABC01166 ABC01167 ABC01169 ABC01177 ABC01179 ABC01180 ABC01181 ABC01184 ABC16131 ABC30555 ABC31601 ABC31617 ABC31619 ABC31825 ABC37479 ABC47224 ABC49951
MLOC	AK252853.1	624	3e-22	298 - 356	98	58 / 59	plus	ABC01121 ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01132 ABC01133 ABC01136 ABC01137 ABC01138 ABC01140 ABC01141 ABC01142 ABC01143 ABC01147 ABC01150 ABC01151 ABC01154 ABC01156 ABC01157 ABC01158 ABC01161 ABC01162 ABC01164 ABC01166 ABC01167 ABC01169 ABC01177 ABC01179 ABC01180 ABC01181 ABC01184 ABC30555 ABC31601 ABC31617 ABC31619 ABC31825 ABC37479 ABC49951
MLOC	MLOC_75262.1	566	3e-22	152 - 210	98	58 / 59	minus	ABC01121 ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01132 ABC01133 ABC01136 ABC01137 ABC01138 ABC01140 ABC01141 ABC01142 ABC01143 ABC01147 ABC01150 ABC01151 ABC01154 ABC01156 ABC01157 ABC01158 ABC01161 ABC01162 ABC01164 ABC01166 ABC01167 ABC01169 ABC01177 ABC01179 ABC01180 ABC01181 ABC01184 ABC16131 ABC30555 ABC31601 ABC31617 ABC31619 ABC31825 ABC37479 ABC49951
MLOC	MLOC_75262.3	784	3e-22	364 - 422	98	58 / 59	minus	ABC01121 ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01132 ABC01133 ABC01136 ABC01137 ABC01138 ABC01140 ABC01141 ABC01142 ABC01143 ABC01147 ABC01150 ABC01151 ABC01154 ABC01156 ABC01157 ABC01158 ABC01161 ABC01162 ABC01164 ABC01166 ABC01167 ABC01169 ABC01177 ABC01179 ABC01180 ABC01181 ABC01184 ABC16131 ABC30555 ABC31601 ABC31617 ABC31619 ABC31825 ABC37479 ABC49951
MLOC	MLOC_75262.2	567	3e-22	152 - 210	98	58 / 59	minus	ABC01121 ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01132 ABC01133 ABC01136 ABC01137 ABC01138 ABC01140 ABC01141 ABC01142 ABC01143 ABC01147 ABC01150 ABC01151 ABC01154 ABC01156 ABC01157 ABC01158 ABC01161 ABC01162 ABC01164 ABC01166 ABC01167 ABC01169 ABC01177 ABC01179 ABC01180 ABC01181 ABC01184 ABC16131 ABC30555 ABC31601 ABC31617 ABC31619 ABC31825 ABC37479 ABC49951
MLOC	AK251792.1	617	3e-21	287 - 343	98	56 / 57	plus	ABC01121 ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01132 ABC01133 ABC01136 ABC01137 ABC01138 ABC01140 ABC01141 ABC01142 ABC01143 ABC01147 ABC01150 ABC01151 ABC01154 ABC01156 ABC01157 ABC01158 ABC01161 ABC01162 ABC01164 ABC01166 ABC01167 ABC01169 ABC01177 ABC01179 ABC01180 ABC01181 ABC01184 ABC16131 ABC30555 ABC31601 ABC31617 ABC31619 ABC31825 ABC37479 ABC49951
MLOC	AK252922.1	746	3e-21	334 - 390	98	56 / 57	plus	ABC01121 ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01132 ABC01133 ABC01136 ABC01137 ABC01138 ABC01140 ABC01141 ABC01142 ABC01143 ABC01147 ABC01150 ABC01151 ABC01154 ABC01156 ABC01157 ABC01158 ABC01161 ABC01162 ABC01164 ABC01166 ABC01167 ABC01169 ABC01177 ABC01179 ABC01180 ABC01181 ABC01184 ABC16131 ABC30555 ABC31601 ABC31617 ABC31619 ABC31825 ABC37479 ABC49951
MLOC	AK370433	567	3e-21	285 - 341	98	56 / 57	plus	ABC01121 ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01132 ABC01133 ABC01136 ABC01137 ABC01138 ABC01140 ABC01141 ABC01142 ABC01143 ABC01147 ABC01150 ABC01151 ABC01154 ABC01156 ABC01157 ABC01158 ABC01161 ABC01162 ABC01164 ABC01166 ABC01167 ABC01169 ABC01177 ABC01179 ABC01180 ABC01181 ABC01184 ABC30555 ABC31601 ABC31617 ABC31619 ABC31825 ABC37479 ABC49951
MLOC	AK363636	613	3e-21	285 - 341	98	56 / 57	plus	ABC01121 ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01132 ABC01133 ABC01136 ABC01137 ABC01138 ABC01140 ABC01141 ABC01142 ABC01143 ABC01147 ABC01150 ABC01151 ABC01154 ABC01156 ABC01157 ABC01158 ABC01161 ABC01162 ABC01164 ABC01166 ABC01167 ABC01169 ABC01177 ABC01179 ABC01180 ABC01181 ABC01184 ABC16131 ABC28961 ABC30555 ABC31601 ABC31617 ABC31619 ABC31825 ABC37479 ABC49951
MLOC	AK252598.1	645	3e-21	288 - 344	98	56 / 57	plus	ABC01121 ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01132 ABC01133 ABC01136 ABC01137 ABC01138 ABC01140 ABC01141 ABC01142 ABC01143 ABC01147 ABC01150 ABC01151 ABC01154 ABC01156 ABC01157 ABC01158 ABC01161 ABC01162 ABC01164 ABC01166 ABC01167 ABC01169 ABC01177 ABC01179 ABC01180 ABC01181 ABC01184 ABC16131 ABC28961 ABC30555 ABC31601 ABC31617 ABC31619 ABC31825 ABC37479 ABC49951
JLOC1	JLOC1_4223.1	408	4e-23	41 - 97	100	57 / 57	minus
JLOC1	JLOC1_50199.1	799	1e-22	381 - 439	98	58 / 59	minus
JLOC1	JLOC1_51182.2	511	6e-21	283 - 341	97	57 / 59	plus
JLOC1	JLOC1_51182.1	992	6e-21	320 - 378	97	57 / 59	plus
Harvest21	ABC01164	634	1e-24	287 - 345	100	59 / 59	plus	ABC01164
Harvest21	ABC01169	661	1e-23	292 - 348	100	57 / 57	plus	ABC01169
Harvest21	ABC01133	587	1e-23	246 - 302	100	57 / 57	plus	ABC01133
Harvest21	ABC48870	532	5e-23	276 - 334	98	58 / 59	plus
Harvest21	ABC42220	364	5e-23	270 - 328	98	58 / 59	plus
Harvest21	ABC32155	521	5e-23	284 - 342	98	58 / 59	plus
Harvest21	ABC01180	885	5e-23	537 - 595	98	58 / 59	minus	ABC01180
Harvest21	ABC01177	610	5e-23	289 - 347	98	58 / 59	minus	ABC01177
Harvest21	ABC01153	568	5e-23	279 - 337	98	58 / 59	plus
Harvest21	ABC01147	662	5e-23	302 - 360	98	58 / 59	plus	ABC01147
Harvest21	ABC01137	702	5e-23	284 - 342	98	58 / 59	plus	ABC01137
Harvest21	ABC01130	735	5e-23	320 - 378	98	58 / 59	plus
Harvest21	ABC01121	704	5e-23	281 - 339	98	58 / 59	plus	ABC01121
Harvest21	ABC49951	687	6e-22	490 - 546	98	56 / 57	minus	ABC49951
Harvest21	ABC47991	286	6e-22	92 - 148	98	56 / 57	plus
Harvest21	ABC44469	581	6e-22	222 - 278	98	56 / 57	plus
Harvest21	ABC32154	489	6e-22	273 - 329	98	56 / 57	plus
Harvest21	ABC27224	619	6e-22	275 - 331	98	56 / 57	plus
Harvest21	ABC01183	699	6e-22	284 - 340	98	56 / 57	plus
Harvest21	ABC01179	992	6e-22	796 - 852	98	56 / 57	plus	ABC01179
Harvest21	ABC01171	651	6e-22	296 - 352	98	56 / 57	plus
Harvest21	ABC01163	655	6e-22	255 - 311	98	56 / 57	plus
Harvest21	ABC01161	733	6e-22	320 - 376	98	56 / 57	plus	ABC01161
Harvest21	ABC01152	625	6e-22	273 - 329	98	56 / 57	plus
Harvest21	ABC01142	561	6e-22	265 - 321	98	56 / 57	plus	ABC01142
Harvest21	ABC01134	677	6e-22	280 - 336	98	56 / 57	plus
Harvest21	ABC01131	692	6e-22	283 - 339	98	56 / 57	plus	ABC01131
Harvest21	ABC01129	621	6e-22	274 - 330	98	56 / 57	plus	ABC01129
Harvest21	ABC01128	656	6e-22	251 - 307	98	56 / 57	plus	ABC01128
Harvest21	ABC01125	618	6e-22	277 - 333	98	56 / 57	plus	ABC01125
Harvest21	ABC41297	442	2e-21	334 - 392	97	57 / 59	minus
Harvest21	ABC31601	426	2e-21	315 - 373	97	57 / 59	minus	ABC31601
Harvest21	ABC01165	1368	2e-21	272 - 330	97	57 / 59	plus
Harvest21	ABC01155	615	2e-21	342 - 400	97	57 / 59	plus
Harvest21	ABC01132	669	2e-21	284 - 342	97	57 / 59	plus	ABC01132
Harvest21	ABC01124	797	2e-21	341 - 399	97	57 / 59	plus	ABC01124
Harvest21	ABC52126	615	8e-21	310 - 364	98	54 / 55	plus
Harvest21	ABC50184	668	8e-21	473 - 527	98	54 / 55	minus
Harvest21	ABC37479	573	8e-21	510 - 564	98	54 / 55	minus	ABC37479
Harvest21	ABC31510	587	8e-21	203 - 257	98	54 / 55	plus
Harvest21	ABC30555	617	8e-21	83 - 137	98	54 / 55	plus	ABC30555
Harvest21	ABC01184	613	8e-21	457 - 511	98	54 / 55	minus	ABC01184
Harvest21	ABC01181	839	8e-21	461 - 515	98	54 / 55	minus	ABC01181
Harvest21	ABC01172	663	8e-21	310 - 364	98	54 / 55	plus
Harvest21	ABC01162	711	8e-21	343 - 397	98	54 / 55	plus	ABC01162
Harvest21	ABC01158	775	8e-21	319 - 373	98	54 / 55	plus	ABC01158
Harvest21	ABC01156	748	8e-21	328 - 382	98	54 / 55	plus	ABC01156
Harvest21	ABC01151	737	8e-21	310 - 364	98	54 / 55	plus	ABC01151
Harvest21	ABC01148	824	8e-21	327 - 381	98	54 / 55	plus
Harvest21	ABC01140	681	8e-21	317 - 371	98	54 / 55	plus	ABC01140
Harvest21	ABC01123	766	8e-21	341 - 395	98	54 / 55	plus	ABC01123
Harvest35	U35_31972	324	3e-25	256 - 315	100	60 / 60	plus
Harvest35	U35_36584	514	1e-24	407 - 465	100	59 / 59	minus
Harvest35	U35_13981	634	1e-24	287 - 345	100	59 / 59	plus
Harvest35	U35_14007	661	1e-23	292 - 348	100	57 / 57	plus
Harvest35	U35_13980	603	1e-23	246 - 302	100	57 / 57	plus
Harvest35	U35_14018	888	5e-23	291 - 349	98	58 / 59	plus
Harvest35	U35_14010	610	5e-23	264 - 322	98	58 / 59	plus
Harvest35	U35_13992	679	5e-23	302 - 360	98	58 / 59	plus
Harvest35	U35_13978	737	5e-23	320 - 378	98	58 / 59	plus
Harvest35	U35_13973	704	5e-23	281 - 339	98	58 / 59	plus
Harvest35	U35_48315	687	6e-22	490 - 546	98	56 / 57	minus
Harvest35	U35_45495	581	6e-22	222 - 278	98	56 / 57	plus
Harvest35	U35_38844	641	6e-22	413 - 469	98	56 / 57	minus
Harvest35	U35_14013	754	6e-22	282 - 338	98	56 / 57	plus
Harvest35	U35_14006	697	6e-22	286 - 342	98	56 / 57	plus
Harvest35	U35_14003	737	6e-22	320 - 376	98	56 / 57	plus
Harvest35	U35_13994	630	6e-22	282 - 338	98	56 / 57	plus
Harvest35	U35_13987	692	6e-22	265 - 321	98	56 / 57	plus
Harvest35	U35_13975	652	6e-22	280 - 336	98	56 / 57	plus
Harvest35	U35_13998	796	2e-21	342 - 400	97	57 / 59	plus
Harvest35	U35_13979	673	2e-21	284 - 342	97	57 / 59	plus
Harvest35	U35_50103	615	8e-21	310 - 364	98	54 / 55	plus
Harvest35	U35_48425	668	8e-21	473 - 527	98	54 / 55	minus
Harvest35	U35_42086	573	8e-21	510 - 564	98	54 / 55	minus
Harvest35	U35_31341	587	8e-21	203 - 257	98	54 / 55	plus
Harvest35	U35_30577	617	8e-21	83 - 137	98	54 / 55	plus
Harvest35	U35_14017	717	8e-21	216 - 270	98	54 / 55	plus
Harvest35	U35_14015	825	8e-21	334 - 388	98	54 / 55	plus
Harvest35	U35_14004	711	8e-21	343 - 397	98	54 / 55	plus
Harvest35	U35_13999	748	8e-21	328 - 382	98	54 / 55	plus
Harvest35	U35_13996	829	8e-21	310 - 364	98	54 / 55	plus
Harvest35	U35_13984	703	8e-21	322 - 376	98	54 / 55	plus
Harvest35	U35_13974	764	8e-21	341 - 395	98	54 / 55	plus

Contig Sequence (324 bp)

>U35_31972 324 Hv_44K_v2
TCCGCGCCGCCACCCAAAACCCTAGCCCGCGCCACCGCGCTCACCGCAGCCAAGCGCCCG
CCGCAGCCACCATGGCAGCCGTTCTCACCCGCCCGACGCCGGGCACCGTCCAGTGCTTCG
GCCGGAAGAAGACCGCCGTCGCCGTGGCCTACTGCAAGCCCGGGCGCGGCCTCATCAAGG
TCAACGGCGCGCCGATCGAGCTCATCCGCCCCGAGATGCTCCGCCTCAAGGCCTTCGAGC
CGATCCTGCTCGCCGGCATGTCCATCATGAACTCCTTCATCAACGACATCTTTGAGAAGC
TCGCCGGCGAGTCGGCCAAGCTGG

Homology of Contig U35_31972 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None