barSeed - Barley Seed Development Database

Probe ABC28961

Source Contig ABC28961

barSeed

Links

Affymetrix Source Sequence (187 bp)

>ABC28961 187
CTACTACGGCACAAACGGCGTCACCAAGTTCACCTCCTCCTAGGCGTCTTCCTTGCATCG
CATGGACGAATTGATGGTGACATTATGTATGTAGTTAGCGGCACGATGTTACAACCTTTG
TAAGAATTGTGCTGTTTGCGGGTCTGAAGAAATAGTGATGTTGCCGTCNNAAAAAAAAAA
AAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_74005.2	453	2e-68	195 - 355	96	154 / 161	CUST_28989_PI390587928	ABC01121 ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01136 ABC01137 ABC01140 ABC01141 ABC01142 ABC01143 ABC01147 ABC01151 ABC01154 ABC01156 ABC01157 ABC01158 ABC01161 ABC01162 ABC01164 ABC01166 ABC01167 ABC01169 ABC01177 ABC01179 ABC01180 ABC01181 ABC01184 ABC28961 ABC30555 ABC31601 ABC31617 ABC37479 ABC49951
AK363636	613	1e-61	451 - 611	93	150 / 161	CUST_8867_PI390587928	ABC01121 ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01132 ABC01133 ABC01136 ABC01137 ABC01138 ABC01140 ABC01141 ABC01142 ABC01143 ABC01147 ABC01150 ABC01151 ABC01154 ABC01156 ABC01157 ABC01158 ABC01161 ABC01162 ABC01164 ABC01166 ABC01167 ABC01169 ABC01177 ABC01179 ABC01180 ABC01181 ABC01184 ABC16131 ABC28961 ABC30555 ABC31601 ABC31617 ABC31619 ABC31825 ABC37479 ABC49951
MLOC_24214.1	485	2e-53	235 - 395	90	145 / 161	None	ABC01121 ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01136 ABC01137 ABC01140 ABC01141 ABC01142 ABC01143 ABC01147 ABC01151 ABC01154 ABC01156 ABC01157 ABC01158 ABC01161 ABC01162 ABC01164 ABC01166 ABC01167 ABC01177 ABC01179 ABC01181 ABC01184 ABC28961 ABC30555 ABC31601 ABC31617 ABC37479 ABC49951
AK252598.1	645	1e-51	454 - 614	89	144 / 161	CUST_8867_PI390587928	ABC01121 ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01132 ABC01133 ABC01136 ABC01137 ABC01138 ABC01140 ABC01141 ABC01142 ABC01143 ABC01147 ABC01150 ABC01151 ABC01154 ABC01156 ABC01157 ABC01158 ABC01161 ABC01162 ABC01164 ABC01166 ABC01167 ABC01169 ABC01177 ABC01179 ABC01180 ABC01181 ABC01184 ABC16131 ABC28961 ABC30555 ABC31601 ABC31617 ABC31619 ABC31825 ABC37479 ABC49951