barSeed - Barley Seed Development Database

Probe CUST_8691_PI390587928

Source Contig U35_14330

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8691_PI390587928	Hv_44K_v2	TTTGCCTGTCTTTCTCGTGATGATCGCAACTCTCTTCTATGTGATGGTAGTTTAGATGAT	1110	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54253.2	250	7e-23	167 - 223	100	57 / 57	plus	ABC11496 ABC24152 ABC38666 ABC49701
MLOC	MLOC_54253.1	389	7e-23	306 - 362	100	57 / 57	plus	ABC11496 ABC11497 ABC24152 ABC38666 ABC49701
MLOC	MLOC_378.1	220	3e-21	51 - 110	97	58 / 60	minus	ABC11496 ABC24152 ABC38666 ABC49701
JLOC1	JLOC1_34913.2	249	4e-23	166 - 222	100	57 / 57	plus
JLOC1	JLOC1_34913.1	389	4e-23	306 - 362	100	57 / 57	plus
Harvest21	ABC24152	998	3e-25	1 - 60	100	60 / 60	minus	ABC24152
Harvest35	U35_14330	1170	3e-25	1111 - 1170	100	60 / 60	plus

Contig Sequence (1170 bp)

>U35_14330 1170 Hv_44K_v2
CTACGGTAGGTACCTCGCCGCCACGGATGGGCCGGCGCCGGTAGGCCACCGTGGGTTCCG
CGTTGAGTAGCGCAGCTACAACCAGGTGAGGACGCCAGAGCTTCCACATCGTCGTCATCG
TCGCCGGGACGCCTCAATAGGGTGAGCTTTTGCTGAAGAGTGAATGAGGGTGCCGAGCTC
ATTGACTCCATCCTCGACGTCGTCTGCAAGGAGGCCGAGAACCGCGACTGCCTCCAAGGT
TTCCAGGTGTGCCAATTGCTGGGCGGCGGCACGGGGTCCAACATGGGCGTGCTGCTCATC
TCCAACATCCGGGAGGAGTACCTGGACTGCATGATGCTCACCTTGTCTGTCTTCCCCTAC
TGCCGCCCGCAGCCTCAGATCAGACAAGATAGTTTGTTGTTTGTTATTTTTTGTTTTACA
AGTATAATCATCTGCGTAGCTCGCGACTGACAAGACGATGATACATCCGAGTGTATTTCC
CTGTTTTGTTTCAGGATATGTTTTAGTAGGATTTTGCTTGTGTCACTAAGAGAAGCTCTT
TTCTGCCTCGTGCGGTAGCTCGGAGAGGAAGAAGAAAGAAGAGGAGCTACATGCTGGATG
AATCTGGACCAACTCCAACCCAACCCCAGTACTTGTAGATGTTATACATACAGTAGATGT
TATATATTCAGTCATCCAATTCTGACTGTCCGCTCGAGCGGCTCGATGAGCTTAATTTGA
GGGCAAAGAACACAGTGGCGTTCGGCGAATCTGCTACAGTCCGTGTGCTTCATTTCACCA
AGTAAAATCAAATCACACAAATTGCGATTCAAATGATATTGCCTGATTGCTCATCTTTGA
GATGGGTGACATGGATGATATGGAATATTTTGAAGGCTTTGGTGATGAAGATGATGATGG
AGATGAAGATTATATGGAAGAGCGAGTATCAAAGAAACCCAAGCGATCAGACTTTGATTC
AAGTTCAAAGATTGGGCAAAAATTTAGGAAGGTTATCTCCGAGGTGGAAGAAGACGAGGA
CAGGGGTAGCAGGCAAAGGACGCGAAAGTGATTCTCGAGGCACGGCTTCAGTAACATGCT
TGGTGTCGATGATGTTGTACTTTAGATAATTTTGCCTGTCTTTCTCGTGATGATCGCAAC
TCTCTTCTATGTGATGGTAGTTTAGATGAT

Homology of Contig U35_14330 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None