- Probe CUST_8622_PI390587928
- Source Contig U35_48430
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_8622_PI390587928 | Hv_44K_v2 | ATGGTATCTCTATTTTTGAAGCGGTGACGTCTTGTGTATGATCTGGCCATTGTCGTCGGA | 44 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.076 | 1.862 | 1.304 | 0.701 | 0.172 | 0.212 |
| Raw | 1258.220 | 1787.086 | 1080.732 | 917.856 | 79.304 | 107.659 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_14388.1 | 501 | 7e-23 | 193 - 252 | 98 | 59 / 60 | minus | ABC09506 ABC37822 ABC49680 ABC50194 |
| MLOC | MLOC_14390.1 | 2815 | 7e-23 | 164 - 223 | 98 | 59 / 60 | minus | ABC09506 ABC37822 ABC49680 ABC50194 |
| MLOC | MLOC_14390.2 | 2019 | 7e-23 | 163 - 222 | 98 | 59 / 60 | minus | ABC09506 ABC37822 ABC49680 ABC50194 |
| MLOC | MLOC_14390.3 | 3017 | 7e-23 | 160 - 219 | 98 | 59 / 60 | minus | ABC09506 ABC37822 ABC49680 ABC50194 |
| MLOC | MLOC_14390.4 | 1977 | 7e-23 | 38 - 97 | 98 | 59 / 60 | minus | ABC09506 ABC37822 ABC49680 ABC50194 |
| JLOC1 | JLOC1_9832.4 | 2238 | 4e-23 | 1817 - 1876 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_9832.3 | 2093 | 4e-23 | 1672 - 1731 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_9832.2 | 2072 | 4e-23 | 1651 - 1710 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_9832.1 | 1898 | 4e-23 | 1477 - 1536 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC50194 | 669 | 3e-25 | 45 - 104 | 100 | 60 / 60 | minus | ABC50194 |
| Harvest35 | U35_48430 | 669 | 3e-25 | 45 - 104 | 100 | 60 / 60 | minus |
Contig Sequence (669 bp)
>U35_48430 669 Hv_44K_v2 ATTTAGAGTAGGGTGGAGACTGGATGCGTATGAGATTCTGAGCATCCGACGACAATGGCC AGATCATACACAAGACGTCACCGCTTCAAAAATAGAGATACCATGAAGAACCACAAATCA CCATACGATGTACAGATATAGCATGACCCCGAGTACGCATTTTTTGTATTCTAACACAGC AGACTGCTGCATCTATCCTTAACAAATTTCATCCCTTAACCATGCGGCGCCACAGCTCAT TCACCGCAAATTAAGCGTGTGACCTTGTCTCTGCAGTTCTGCACGGGGAGTGGCTATTGT GCAGCTTTCCAAGAAAAACGCACAATCCCCATGCAGGTGTAGCTCCATATCTAACTTCGT TCCCTGTGCATCAGGCTTTATCCAAATTGTCTAGTTCATCACGCGCACTTTGCTTCCGGT AATGAAAATAAAGGAACTCCCTACATATGTCGTATTCCCCACCAAAGCAAAGGTAAACAT TAGCGGACTGAGCCCCTCGGCATGGCCTCTTTGCATATTTAAGAAGATCTGGGGAAGTCG CCCACCCATATAGATAACTGCCATGGCCCAACCAAGAAAGCTTCCAATTCCACTTCCACT GCCATGGCTCAGAGATGAACCTGCATGGTCATCCGCTAAAACTAAGAGCTTTCTTCCGAC AGGGATGAT
Homology of Contig U35_48430 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |