barSeed - Barley Seed Development Database

Probe CUST_8476_PI390587928

Source Contig U35_8044

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8476_PI390587928	Hv_44K_v2	TAATCCATCTCCCCTACGTTTCTGATAGATTTCTTCCATGTCAATGGAGACGAGAGACGG	55	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361887	3776	2e-24	1736 - 1795	100	60 / 60	plus	ABC02159 ABC02161 ABC02490 ABC02491 ABC02496 ABC02634 ABC29477 ABC31795 ABC50608
MLOC	MLOC_66445.1	2225	7e-23	2130 - 2189	98	59 / 60	minus	ABC02490 ABC02491 ABC02493 ABC02496 ABC50608
JLOC1	JLOC1_43785.1	2392	4e-23	42 - 101	98	59 / 60	plus
Harvest35	U35_8044	602	3e-25	56 - 115	100	60 / 60	plus

Contig Sequence (602 bp)

>U35_8044 602 Hv_44K_v2
TCGAGCACTGTTGGCCTAGGACAGATTCTTGCTAATCGAGAAATCACTTCCACTCTAATC
CATCTCCCCTACGTTTCTGATAGATTTCTTCCATGTCAATGGAGACGAGAGACGGCAGCT
CGACGACGCCGGCACTGCTGCCGTGCTCCTACTGGCCTCTGCCGGACGATGCCGAGGCCG
CCGTGGTGGGCCACGCGCGCCGGAGTGCCGCCCCGCTGTGCGCCGCGCTGCTGGCGGCGT
CGGCAGCCGTGCTCCTCGTGGTTGCCGCGCTCGCCGGCGTCAGGATCGCTGGTCAGCTGC
CACTGCCAGCCACGGGCGTCGCCATGTCCGGCCACACGACGACGGCCGACGACACGGTCC
CAATGAGAAGCAGCAGCAGGGGCCCTGAGTCCGGCGTCTCGGAGAAGGCGTCCGGCGCCG
CAGCGCACGGCGGCATGCTTGGTGCCGACGCCGGCGGCAACGCGTTCCCGTGGAGCAACG
CCATGCTCCAGTGGCAGCGCACCGGCTTCCACTTCCAGCCCGAGAAGAATTGGATGAACG
ATCCCCACGGTCCCGTGTACTACAAGGGATGGTACCACCTCTTTTACCAGTACAACCCGG
AC

Homology of Contig U35_8044 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None