barSeed - Barley Seed Development Database

Probe CUST_8200_PI390587928

Source Contig U35_5345

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8200_PI390587928	Hv_44K_v2	AAGACATCACCTTGATTCAGTCACGAGCCCCTACTCCCATATTTGTTATGAGAGCGACTT	1454	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369068	2790	2e-24	1766 - 1825	100	60 / 60	plus	ABC11577 ABC20681
MLOC	MLOC_66849.2	1113	2e-24	330 - 389	100	60 / 60	plus	ABC11577 ABC20681
MLOC	MLOC_66849.3	1198	2e-24	330 - 389	100	60 / 60	plus	ABC11577 ABC20681
MLOC	MLOC_66849.1	1288	2e-24	435 - 494	100	60 / 60	plus	ABC11577 ABC20681
JLOC1	JLOC1_44098.1	1183	8e-25	134 - 193	100	60 / 60	plus
Harvest21	ABC11577	1353	3e-25	1238 - 1297	100	60 / 60	plus	ABC11577
Harvest35	U35_5345	1570	3e-25	1455 - 1514	100	60 / 60	plus

Contig Sequence (1570 bp)

>U35_5345 1570 Hv_44K_v2
CAGTCAAACGGCAAGAGCTCGCTCCTGGAGGCGCTCCTCGGCTTCCGCTTCAACGTCCAA
GAGGTCGAGATGGGCACCCGCCGCCCCCTCGTCCTCCAGATGGTCCACGACCCCACCGCC
CTCGATCCCCGCTCCCGCTTCCAGGAGGAGGACTCGAAGGAGTACGGCCACCCCATGGTG
CAGGTCGCGGCCATAGCCGACCTCATCAAGCAGCGCACCGAGTCGCACCTACGGACGATC
AAGGCCGCCGTCTCGCCCAAGCCCATCGTCATGAGGGCCGAGTACGCGCACTGCCCCAAC
CTCACCATCATCGACACCCCAGGTTTCGTGCTTAAGGCCAAGAAAGGTGAGCCGGAGAGG
ACGCCTGAGGAGATCCTGTCGATGGTGAAGACACTAGCGAGCCCGCCCCACCGCCTCATT
CTGTTCCTCCAGCAGAGCAGCGTCGAGTGGTGCTCTTCGCTCTGGCTCGATGCAATCAGA
GAGATCGATCCCACTTTCAGGCGCACCATGATAGTCATCTCCAAGTTTGACAACCGACTC
AAGGAATTTACCGAAAGGTGGGAGGTCGATAGCTACCTGAGCGCAAGCGGTTACCTTGGG
GACAATATCCACCCATTCTTTGTGGCTCTTCCAAAGGACCGAGGAACCATCTCCAATGAC
GAGTTCCGGCGGCAAATATGTCAGGTAGATATTGATGTGCTGCGACACTTGCGTGATGGT
GTGAAAGGGGGTTTCAATGAAGACAAGTTTGCTCCGTACATTGGGTTTAGCTGTCTCAGG
AAGTATCTGGAGTCTGAACTTCAGAAGAGGTACAAATAAGCAGCTCCAGCCACCCTAGCA
TTGTTGGAGCAGAGATGCAGTGATGTCTCAGTGGACCTATCCAGACTGGACTCCAAACTG
CAAGCAACCTCTGACGTATCTCAGCGTGCATTACTTGATGGAGCAGCTGATCCAGCCCCA
GAGGTGTGGGGGGAAACTACTGAAGAGGAGCAAATTCACAGTGGTATTGACAACTGGCCT
AGCACCAGCGTTCCTGTAAAACCTCCCCACTCCAGCCTTAAGCTGTATGGTGGTGCGGCT
TTTGAGAGGGTAATGCACGAATTCCGCTCTGCGACATATTCCATGGAGTGCCCACAGGTG
TCAAGAGAGAAGGTTGCGAACATATTACTTGCCCATGCTGGAAGAGGTGGAAGCAGTGGG
ATGACTGAGGCAGCTGCTGAGATAGCACGCGCGGCTGCACGATCATGGCTTGCTCCTCTT
ACTGAAACTACATGTGATCGGCTTGCATTTGTCCTGCAAAGCTTATTTGACCTTGCAATG
GAGCGCAGCCGCACTGATGATTCAAGATATCAAAATGTTGAAAATATGGATGGATATGTT
GGCTTCCTTGCTGCTCTCCGGTGCTCATATTATAAGTTTGTCAAGGATTTGTCCAAGCAG
TGCAAGCAGATAGTAAGACATCACCTTGATTCAGTCACGAGCCCCTACTCCCATATTTGT
TATGAGAGCGACTTTCTCGGTGGCGTTGGATCTGTAGCAAACACCCTTCACAGGTTTAAT
CAGTTCACTG

Homology of Contig U35_5345 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g54420.1	823	protein\|dynamin family protein, putative, expressed
Brachypodium v1_2	Bradi2g49747.1	822
Arabidopsis v10	AT1G53140.1	817	\| Symbols: DRP5A \| Dynamin related protein 5A \| chr1:19799271-19802441 FORWARD LENGTH=817