barSeed - Barley Seed Development Database

Probe CUST_7737_PI390587928

Source Contig U35_1409

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7737_PI390587928	Hv_44K_v2	CCTGAAAAGGACCTCAGATTTTGTTCCTGCTAGTTTGCTAATCGCCTGGCTGGTTTTTCA	171	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373864	1116	2e-24	116 - 175	100	60 / 60	plus	ABC02236 ABC30266 ABC41013
MLOC	MLOC_47484.1	619	2e-24	22 - 81	100	60 / 60	plus	ABC02236
MLOC	MLOC_47483.1	1171	2e-24	22 - 81	100	60 / 60	plus	ABC02236
JLOC1	JLOC1_30611.1	521	8e-25	22 - 81	100	60 / 60	plus
Harvest21	ABC02240	421	3e-25	131 - 190	100	60 / 60	plus
Harvest21	ABC02236	913	3e-25	79 - 138	100	60 / 60	plus	ABC02236
Harvest21	ABC02232	553	3e-25	172 - 231	100	60 / 60	plus
Harvest35	U35_1409	553	3e-25	172 - 231	100	60 / 60	plus

Contig Sequence (553 bp)

>U35_1409 553 Hv_44K_v2
CTTCGCTCACCCACCCAGCTCCTCTCTCTCCCCCGCGCAGGGAACCCTAGCCCATGCGGA
TCGAACACCCTCCTCCCCTTCCAGATCGCAACCGCCACCTCCTACCCACCGTCCCACCCA
TCCTCCGCTCGTCATGCCCTTCCTCCGCTCGTCCGTCGTCCGTTGTCGGCTCCTGAAAAG
GACCTCAGATTTTGTTCCTGCTAGTTTGCTAATCGCCTGGCTGGTTTTTCATGTTTGTGT
GTGTGTGTGTGTGTGCAGGCGCGTACACGGCGTGCGGGGGTGGCGCGGCCTATGTGTGGG
TGGCGGCGACGTGCAGGGTCGGCTCCCTCTTCTACTTCCTCGCCAAGGCCGTCGCGGTCT
TCGGCGTCGCCGCCGCCGGCGCCGTCGGCCTCGACCTGCACGGCAAGGGCCAGGCCCTCG
TCGTCGAGGCCATGTTCCTCATGTCGCTCGCGCTCGCGCTCGCCGCCGCGCACCTCGCCA
TGGCGTACCGGGCGAGCAGCCGGGAGAAGCGCCGGCTCAACGTCGTCTACAAAATCGACG
TCGAAGCGATGCT

Homology of Contig U35_1409 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None