barSeed - Barley Seed Development Database

Probe ABC41013

Source Contig ABC41013

barSeed

Links

Affymetrix Source Sequence (626 bp)

>ABC41013 626
AGTAATGTGGAGTAGCTTGTTTTGTATTATCTTACATGTCTGCTAATTATTGTGTCATTG
ACTCTTTCTTGTGTCAGTGCTTAAATTCCTCCAGTAAAGCGAAAATACCAAAAAGATATT
GAATTTTCTTGTCTCCATTTTCTTTGTCCATATTTTCCTGGAACAATCTAGTTTGAAGTT
TAATTTTCAGACTCAGTGACTAGTTTAGGTTGGACTAATTATACTCCAGAATTTATATCA
CGGGATTTTTAACATAGTCTTCAGGCTGAACACAAATCTTTTTATTTCTAATATTTTTTT
ATATTTCTTTTCTTTTGATTGATTCATGTACAGTGTAATGTTCTTGTAGGTTGACAACTT
CATCTCGAGCATGTTTCATAGAAGAGTGGAATGAAGTCCATTGTACTGTAGGGAAGTAGC
AGATGTGCCATTGTTCTATTGTGAAATTATGTTCGTCCTTGCTATATTCATGTGTAAGGA
AATGTCTTCAAGAGATGTTTTATTGTGTTATGTTAATCTGGGCAATGTATTATGTGATGT
TATATGATGGATGATTTTAATTCGATTTGGAGTTTTTCTTGATTTAAATATAGAAATAGT
GTTGGATTTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_80295.1	1924	1e-146	1 - 282	100	282 / 282	None	ABC41013
MLOC_80295.2	2488	4e-146	1 - 281	100	281 / 281	CUST_31128_PI390587928	ABC41013
MLOC_80295.3	1529	2e-144	1 - 278	100	278 / 278	None	ABC41013
AK360098	2805	1e-85	2512 - 2803	87	255 / 294	CUST_18057_PI390587928	ABC30266 ABC41013 ABC41313
AK355430	897	9e-63	692 - 894	88	180 / 204	None	ABC30266 ABC41013 ABC41313
AK373864	1116	7e-54	897 - 1116	84	190 / 225	CUST_7737_PI390587928	ABC02236 ABC30266 ABC41013