barSeed - Barley Seed Development Database

Probe CUST_7647_PI390587928

Source Contig U35_1387

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7647_PI390587928	Hv_44K_v2	CACACCAACACATAGTTGTTGCTGGGAATTTCTTGAAAAGAAAAGTTGTTTCTGGGCTTG	1408	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15192.1	2673	3e-22	2618 - 2673	100	56 / 56	plus	ABC03650 ABC03651 ABC03652 ABC21572
MLOC	AK355442	1424	9e-22	1365 - 1422	98	57 / 58	plus	ABC03650 ABC03651 ABC03652 ABC21572
JLOC1	JLOC1_10410.1	1546	8e-25	1485 - 1544	100	60 / 60	plus
Harvest35	U35_1387	1486	3e-25	1409 - 1468	100	60 / 60	plus

Contig Sequence (1486 bp)

>U35_1387 1486 Hv_44K_v2
CACAATTTTTTTCTCCGCATAAATCATCCTCCGTCACCGGCGGGGTGAGGGAGACGCGGT
CGGCGGGGCGAGACGCCAGAGACAAACCCAACGGAGTTTCCCCCCTGCCGCCGACCCCAA
ACCCTAGCCGCTCCTCCCAGCCCCAGCCGCTCCTACCGACCCCAGCCAGCCGCCGGAATT
CTCCTGGGGGCTCTATTGGCTTTCCTCAAGCCTGTGGCTTCATCGCGGCAGCATGAGCTC
TGCTGGTTCTGCAAGGATTCCAAAGAGGAGACGGACTACCAAGGCGTCGGAGGCTGCAGA
CCGACAACTTCGGGAGGGACAGTTTCCGGACCTGAACTTGCTTCCAGTGGTTGAAGCACT
CAATACTGGGGGTTCACTCTCCATTAATGAGCCTGTCTCACACAGGCAGCCCCCTCCTAT
GGTGGTTAGCCTGGGTTACGAGACCACACAGGTCGTGGTGTCATCTGCTGCTGCAGGGTC
AAACATTGGCATGAATAGTTTCCCCATCAACGTGGAAGTGATTGATGATGATGTTGCGAT
TTATACCTCAGGGCCGCCCCCTCAAGCAAGGCAACAGTCGTCCAGGACAGGACCTATCAC
TGTGATAATAGATGATGATTCTGAAACTACTGCTGGACCAGCAGGGGAAGCTCTTGATGA
GCATGTGAACACTCTGCTGTCTCTGGGAATGAACCCGAGGCACAATCCCTCGAGAGCACA
ACCCAACACTGACCTTGTAATAAACATAGTAGACATACCTGAGACCAACAACACACCGCC
CAAGGTGGCCCAGGCTGCCCCTGAACCTGTGAAGGAGATCCCAAAGGAAACAAAGTTCAG
CTGTCCAGTCTGCATGAATGAGCTGGTCAATGCATCATCGACCATCTGCGGCCACATTTT
TTGCCAGAAGTGCATCAAGGCCTCCATCCAGGCTCAGAAAAAGTGCCCTACCTGCCGGAG
GAAGTTGACCATAAGCAACTTCCACCGGGTCTACCTCCCGATGGCAGATAATTAAAACTT
ATCCAGCCATTCTTGGAGCATTAGAGCCGATGGCAGATAACTAAAACCTATCCAGCCATT
CTTGGAGCATTAGAGCCGTGGCAGCTGTGACCCTTTTTTGGCACCGGCATTGTGGTGATT
GTATCTGAGCTATTCTTCACAGGGTCATCATGAACAATCAGTTTCCCCCCCCAACAATTT
AACAAGTGCTTGAGACGTGATTACCAATCTGCATACATGGTGCTAGTGGACACCGTTAGT
TAGTTGTTCCTTGTGGAAAGTGGAAACCTAAATTCAGACCGGTATATGTTTGCTGTTCAG
GTATATGTTTTTTTTTCTTCTGCATAACTCTAGAAAATGTTTGTGCTCGCTGCCACCTAA
ATTCAGACCCATTGGGTCTGTATCCTGTCACACCAACACATAGTTGTTGCTGGGAATTTC
TTGAAAAGAAAAGTTGTTTCTGGGCTTGNAAAAAAAAAAAAAAAAA

Homology of Contig U35_1387 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g69040.1	242	1e-75	protein\|zinc finger, C3HC4 type domain containing protein, expressed
Brachypodium v1_2	Bradi2g58870.1	255	5e-107
Arabidopsis v10	None