- Probe CUST_7607_PI390587928
- Source Contig U35_238
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_7607_PI390587928 | Hv_44K_v2 | TTGGCCTGCACAGCATTAACTTCCGTGATAAAATGTCTTGGAGAAACTAGCCACCAAGGA | 1110 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_22799.10 | 2060 | 2e-24 | 797 - 856 | 100 | 60 / 60 | minus | ABC01927 ABC01931 ABC48945 |
| MLOC | MLOC_22799.11 | 2107 | 2e-24 | 775 - 834 | 100 | 60 / 60 | minus | ABC01927 ABC01931 ABC48945 |
| MLOC | MLOC_22799.4 | 1915 | 2e-24 | 598 - 657 | 100 | 60 / 60 | minus | ABC01927 ABC01929 ABC01931 ABC48945 |
| MLOC | MLOC_22799.7 | 1780 | 2e-24 | 499 - 558 | 100 | 60 / 60 | minus | ABC01927 ABC01929 ABC01931 ABC48945 |
| MLOC | MLOC_22799.12 | 1971 | 2e-24 | 499 - 558 | 100 | 60 / 60 | minus | ABC01927 ABC01931 ABC48945 |
| MLOC | MLOC_22799.8 | 1940 | 2e-24 | 468 - 527 | 100 | 60 / 60 | minus | ABC01927 ABC01929 ABC01931 |
| MLOC | MLOC_22799.13 | 1218 | 2e-24 | 436 - 495 | 100 | 60 / 60 | minus | ABC01927 ABC01929 ABC01931 |
| MLOC | MLOC_22799.5 | 1876 | 2e-24 | 559 - 618 | 100 | 60 / 60 | minus | ABC01927 ABC01929 ABC01931 ABC48945 |
| MLOC | MLOC_22799.1 | 2113 | 2e-24 | 671 - 730 | 100 | 60 / 60 | minus | ABC01927 ABC01929 ABC01931 ABC48945 |
| MLOC | MLOC_22799.6 | 1967 | 2e-24 | 467 - 526 | 100 | 60 / 60 | minus | ABC01927 ABC01929 ABC01931 ABC48945 |
| MLOC | MLOC_22799.3 | 1858 | 2e-24 | 595 - 654 | 100 | 60 / 60 | minus | ABC01927 ABC01929 ABC01931 ABC48945 |
| JLOC1 | JLOC1_15791.22 | 1957 | 8e-25 | 1221 - 1280 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15791.21 | 1949 | 8e-25 | 1205 - 1264 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15791.20 | 2178 | 8e-25 | 740 - 799 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15791.19 | 1968 | 8e-25 | 1193 - 1252 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15791.18 | 1541 | 8e-25 | 797 - 856 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15791.17 | 1484 | 8e-25 | 740 - 799 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15791.16 | 2621 | 8e-25 | 1191 - 1250 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15791.15 | 2338 | 8e-25 | 908 - 967 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15791.14 | 2629 | 8e-25 | 1191 - 1250 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15791.13 | 1974 | 8e-25 | 1191 - 1250 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15791.12 | 2636 | 8e-25 | 1206 - 1265 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15791.11 | 1508 | 8e-25 | 733 - 792 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15791.10 | 1640 | 8e-25 | 896 - 955 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15791.9 | 1481 | 8e-25 | 706 - 765 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15791.8 | 1442 | 8e-25 | 706 - 765 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15791.7 | 1670 | 8e-25 | 895 - 954 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15791.6 | 1616 | 8e-25 | 880 - 939 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15791.5 | 1417 | 8e-25 | 673 - 732 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15791.4 | 1454 | 8e-25 | 671 - 730 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15791.3 | 2105 | 8e-25 | 667 - 726 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15791.2 | 2074 | 8e-25 | 644 - 703 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15791.1 | 1659 | 8e-25 | 229 - 288 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01927 | 1626 | 3e-25 | 1111 - 1170 | 100 | 60 / 60 | plus | ABC01927 |
| Harvest35 | U35_238 | 1638 | 3e-25 | 1111 - 1170 | 100 | 60 / 60 | plus |
Contig Sequence (1638 bp)
>U35_238 1638 Hv_44K_v2 TCAACGAGCTACTCGAAGGGGCGTGAGGGTGCAGGCCTGGCCGGAGGAGGTCGGGCCACA GCTGGGAGCCGAGTTAGGAAGCCCGTCCCCCGCGTCGCCCGCGTCTGGCGACACGGGGGA AAACCAGCGCCGCCGCCACGCTCCCTCCTCCACCACCTCTCCAAGCTGCGCCGCTGCTAG AGGATCGGCCGGGGAATCCGCACCGCACCTAGGGAAGGTGGCGACGGGGCGGACTCGTTC CCCTCCCCTGCGCCAGAGCCCTTCCCCCAACCCTCCATCAGGCGGGAGCCCTCCAACACC GCGCCCGCCCCCTCCAACGCCGCCTCCCTCGTCCCCGGCGATGGCACTCGTCCCTCCATG GTCGGATCCGCGGCAGCGGCTTCGCGGTGTCTCCCCCCACAGCACGCACGACCTGGTCTG CCCAGATCCGGTCTAGAGACGCCCCCACCCCCTCCCTCCGGTTGTTGTGTCCTCCGGCCC GCGCGCGGCTGCATGAGCTCGATCTACTCCTCCCCATGCCACCTCCTCCCTCGGCTGCAC GCTCTCCTCTCGTGCTGTTGCTGATGGTGTGGGCGTGGCTCTGGGTGGTGGATGAGTCAA GCGAGCCGAGGCTCCAGGCCTGCCATGTTATTTTTTGTTGAATTAGATTTGTTTTAGAAT TGTCTTATAATTGTTAGCATAAATGATGACTTGTTTTAGAATTTTTAGCATAAGGTTGCC CTCGTTCTTTTATGTTGAATTAGATTTGTTTGTTCCGAAATTTGCAGGCATGTGGTGTGA TGTATTGATCTTGGTCTTGTTCTGTTTGCAGAGACACCTGATTATGTATCAAATCTGTTT TGATCGAGTGCTTTTTGACATTTATAAGGTGTTACTGTTTTAGGAAGATGGAGTGAGACA GATGTTGATACTCCGCTCCAGCAGCTGAAGTGAAATTAAGCATGGTCTGCTGGTACAAAG AGCACAAGACCCTCCAGAGGCAATCAGCTAAGACGAAGAATGTGGAAAGAGCTGGCGAGT TGAGAGAAAGTTCTTTTATGCATTGAGTGCTTGCGTCTACCCTGAATTTAAGGAGCTCAA AACTGTAGTTATCTTGAAGGAGGCGGATGGTTGGCCTGCACAGCATTAACTTCCGTGATA AAATGTCTTGGAGAAACTAGCCACCAAGGAATTGTGCAAGCACTACACAAAGGAATCGAC ATTGAGTGTCGGGTTGGTCGCTTTCACAATATATATGGTCCATATGGGATATGGAAGGTT ATATAGGTGGAAGGGAGAAGGCACCTGCTGCGTTTTGCAGAAAGGCTCTAACCTCCACTG ACCGTTTTGAGATGTGGGGAGATGGTGTGTAGACTAGATCCTTCACATTTATTGATGAAT GTGCGGAGGGTGTCCTCGGGAGTGATGAAATGGTGAGCATGAATGAGATGGTTGAGATAG TCCCGGGCTTCGAGAACAAGCAGCTGCCCATCCACCACATCCCCGGCCCTGAGGGTGTTC ATGGTCGTTACTCTCACAACACGCTCATCAAGGAGAAGCTTGGCTGGGCTCCAGCCATGA GGCTGAATGGACCCTCCTGAATTTTTATAGAATTTTTGAACAATTTTTTAATTCATATAT ATTTTCAATTGGGTAAAT
Homology of Contig U35_238 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os11g37890.1 | 372 | 5e-62 | protein|NAD dependent epimerase/dehydratase family protein, putative, expressed |
| Brachypodium v1_2 | Bradi4g14950.1 | 408 | 3e-63 | |
| Arabidopsis v10 | AT5G28840.1 | 377 | 2e-57 | | Symbols: GME | GDP-D-mannose 3,5-epimerase | chr5:10862472-10864024 REVERSE LENGTH=377 |