barSeed - Barley Seed Development Database

Probe CUST_757_PI390587928

Source Contig U35_45718

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_757_PI390587928	Hv_44K_v2	ACTATCATCACAGAGGTCTATGGTATTGTCAACAAGAAAGCACTGGCCGCCAAAGAAGCA	511	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357508	2178	2e-24	1795 - 1854	100	60 / 60	plus	ABC09906 ABC09907
MLOC	MLOC_45112.1	1287	2e-24	708 - 767	100	60 / 60	plus	ABC03166 ABC03170 ABC09906 ABC09907 ABC21862
JLOC1	JLOC1_29277.1	1055	8e-25	476 - 535	100	60 / 60	plus
Harvest21	ABC09907	1038	3e-25	685 - 744	100	60 / 60	plus	ABC09907
Harvest21	ABC09906	1014	3e-25	444 - 503	100	60 / 60	minus	ABC09906
Harvest35	U35_45718	588	3e-25	512 - 571	100	60 / 60	plus
Harvest35	U35_4049	1187	3e-25	685 - 744	100	60 / 60	plus

Contig Sequence (588 bp)

>U35_45718 588 Hv_44K_v2
GGGGATCTCCGCTTGCTTGATTTTCATTTGGGAAGAGGGAAGTTATTTTTTGGTCTCAGA
GTTGAAAGCGAGGAGAAGGAATGGGCGGACGTGTGGATCACGAGTACTCCTACCTGTTCA
AGATGGTGCTCATCGGGGATAGCGGCGTCGGCAAGTCCAACATCCTCTCCCGATTCACCC
GCAACCACTTCTCCCTCGACTCCAAGTCCACCATCGGCGTGGAGTTCGCCACCAAGTCCT
TGCAGATGGAGGGAAAAACAATAAAGGCTCAGATCTGGGACACAGCTGGTCAGGAGAGGT
ATCGTGCAATTACAAGCGCATATTACCGGGGCGCTGTAGGGGCTCTCCTTGTATATGACA
TCACAAAGAAGCAGAGCTTTGACAATGTTAATAGGTGGCTGCATGAGCTCCGTGATCACG
CTGACTCCAGCATTGTCATCATGATGGTCGGTAACAAGTCCGACCTGACACATCAGCTAT
GGAGGCTGTGAATGTGGTAGAAGCGTTTCAGACTATCATCACAGAGGTCTATGGTATTGT
CAACAAGAAAGCACTGGCCGCCAAAGAAGCAGCAGCAGCAGCTGTTCC

Homology of Contig U35_45718 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g20050.1	218	2e-85	protein\|ras-related protein, putative, expressed
Brachypodium v1_2	Bradi2g30500.1	218	8e-87
Arabidopsis v10	AT1G07410.1	214	6e-76	\| Symbols: ATRABA2B, RAB-A2B, ATRAB-A2B, RABA2b \| RAB GTPase homolog A2B \| chr1:2276270-2277154 FORWARD LENGTH=214