barSeed - Barley Seed Development Database

Probe CUST_74_PI415269222

Source Contig TA34110_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_74_PI415269222	Hv_44K_v2	GGCTGGTTTCCAAAGGGTATAATGTATACTTCTTTTCCAACAGATACCTTGTTCCAATCA	1231	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55027.1	2536	2e-24	16 - 75	100	60 / 60	minus	ABC04674 ABC04676 ABC04677 ABC15844 ABC36284
MLOC	AK356005	2065	6e-24	2007 - 2065	100	59 / 59	plus	ABC04674 ABC04676 ABC04677 ABC15844 ABC36284
JLOC1	JLOC1_35464.1	2284	8e-25	2149 - 2208	100	60 / 60	plus
Harvest21	ABC36284	304	3e-25	224 - 283	100	60 / 60	plus	ABC36284
Harvest21	ABC04676	1749	3e-25	1655 - 1714	100	60 / 60	plus	ABC04676
Harvest35	U35_1746	1794	3e-25	1655 - 1714	100	60 / 60	plus

Contig Sequence (1295 bp)

>TA34110_4513 1295 Hv_44K_v2
GCAAGGGCGTCATGCTCACGCACCGCAGCCTCATCACCAGCGTCGCACAGCAGGTGGACG
GAGAGAACCCGAACCTGTACTTCAGGAAGGAGGACGTGCTGCTGTGCCTGCTGCCGCTGT
TCCACATCTACTCGCTCAACTCGGTGCTGCTGGCGGGGCTGCGCGCCGGGTCGGCGATGG
TGATCATGCGCAAGTTCGACATCGGCGCGCTGGTGGAGCTGGTGCGCGCGCACGGCATCA
CGGTGGCGCCCTTCGTGCCGCCCATCGTGGTGGAGATCGCCAAGAGCCCCCAGGTCACCG
CCGGCGACCTCGCGTCCATCCGCATGGTCATGTCCGGCGCCGCGCCCATGGGCAAGGAGC
TGCAGGACGCCTTCATGGCCAAGATCCCCAACGCCGTGCTCGGGCAGGGGTACGGGATGA
CGGAGGCCGGGCCGGTGCTGGCCATGTGCCTGGCGTTCGCCAAGGAGCCGTTCAAGGTCA
AGTCCGGGTCGTGCGGCACGGTGGTGCGCAACGCCGGGCTCAAGATCGTCGACCCCGACA
CCGGCGCCTCCCTCGGCCGGAACCAGCCCGGCGAGATCTGCATCCGCGGGGAGCAGATCA
TGAAAGGTTACCTTAACGACCCAGAATCCACCAAGAACACCATCGACAAGGATGGCTGGC
TGCACACCGGAGACATCGGCATCGTCGACGACGACGACGAGATCTTCATTGTTGACAGGC
TCAAGGAGATCATCAAGTACAAGGGCTTCCAGGTGGCGCCGGCAGAGCTCGAGGCCCTCC
TCATCACCCACCCGGAGATCAAGGACGCCGCCGTCGTATCGCTGAAGGACGATCTTGCTG
GCGAAGTCCCGATCGCCTTCGTTATGCGGATCGAAGGCTCTGAAATCACCGAGGATGACA
TCAAAAAATTCGTCGCGAAGGAGGTTGTTTTCTACAAGAGGATCCACAAGGTCTTCTTCA
CCGACTCAATCCCCAAGAACCCTTCAGGCAAGATCCTGAGGAAGGACTTGAGAGCCAGGC
TCGCCGCTGGCATCCCCAGCTAAGCGCTGCGGCCGCCCTCCGCTTCTCAGGTACTCAGCC
AGCCAGCAGGGTGCTGGTATAGATCATGTAATATTGGTGAATCTCCACGAAATGGTCGGA
GGAGGTTGAGTTTGTTGGTTCTTCCTGCTCATGTAATGTTGATAAAATGAAATGATATAT
GTAGATGTGTTGTTTTTGAGCATAAGAACAAGGCTGGTTTCCAAAGGGTATAATGTATAC
TTCTTTTCCAACAGATACCTTGTTCCAATCATATC

Homology of Contig TA34110_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g08100.1	555	0.0	protein\|AMP-binding domain containing protein, expressed
Brachypodium v1_2	Bradi3g05750.1	554	0.0
Arabidopsis v10	AT1G51680.1	561	5e-168	\| Symbols: 4CL1, 4CL.1, AT4CL1 \| 4-coumarate:CoA ligase 1 \| chr1:19159007-19161464 REVERSE LENGTH=561