barSeed - Barley Seed Development Database

Probe CUST_7477_PI390587928

Source Contig U35_47947

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7477_PI390587928	Hv_44K_v2	AACTATGGACGAGGCGTGCGTGCGTGGGTGTGTTTGATTCAACTGTTTTGTTTTAACTAC	92	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356204	1760	2e-24	1686 - 1745	100	60 / 60	plus	ABC03235 ABC03237 ABC25388 ABC30667 ABC31592 ABC46432
MLOC	MLOC_30884.1	994	2e-24	132 - 191	100	60 / 60	minus	ABC03237 ABC30667 ABC46432
JLOC1	JLOC1_20374.1	1171	8e-25	307 - 366	100	60 / 60	minus
Harvest21	ABC03237	741	3e-25	93 - 152	100	60 / 60	minus	ABC03237
Harvest21	ABC46432	450	2e-21	19 - 74	98	55 / 56	minus	ABC46432
Harvest35	U35_47947	741	3e-25	93 - 152	100	60 / 60	minus
Harvest35	U35_1050	783	3e-25	663 - 722	100	60 / 60	plus

Contig Sequence (741 bp)

>U35_47947 741 Hv_44K_v2
GAATTTTTTGCTCCCCGTCGAAAAACCAATCCGGTACCTCCCCACCTCGTGGTCATTTTC
CCCACTCCCCACCTCGTGGTCATCCCCACCTCGTAGTTAAAACAAAACAGTTGAATCAAA
CACACCCACGCACGCACGCCTCGTCCATAGTTGATTACAATATCACCCACGCACGCATGC
CTCCCTCGCCTGATCGCTGTTCGCCTGCCTGGCCTGGTCGTCGTTCGCCGCCATCGCCTC
CCTCGCTTGGTCGCCGCTCGCCTCCCTGGTCGCCGTTCGTGGTGCTCGTTCTTGGGCCTC
GCCGGTAGCCGTTCGTCGCCATCGCCTGCCTCGCCTGATCGCCGTTCGCAGGCCTCGCCT
GGTCGCCGTTCGTGCTGCTCGTTCTTGGGCCTCGCCTGGTCGCCGTTCGCCCACCATCGC
CTTCCTCGCCTGATCGCCGTTCGCCGCAGCAGAGGAGCACCTTCTCGCGCCTTGTGCTGC
CTCCCTCGTCACCTCGTCCTCGTCTTCAAACTATCCCTGGAGAAGAGCACCTTGCCTCGC
CTGATGCATGCAACACTAGGAGACTCAGATTTCTCTGCATTTACAGCAGGTTGGCTGTTG
ATGGTAAGGAAACCCTTTGAGTTCATCTTCACCAACTGATCATCAATTGTAGTTGTCTCG
GGTTGAAGACCATCTAACTCAGACCATGGGCTGCTTTTAAGTTTTCCTTCACAGAAGTTT
ACGAACCACTCATTAATGTCT

Homology of Contig U35_47947 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None