barSeed - Barley Seed Development Database

Probe ABC03235

Source Contig ABC03235

barSeed

Links

Affymetrix Source Sequence (1977 bp)

>ABC03235 1977
CCCGCCCGCCGCGACGCCATTAGCAGAGCAGCGGGGAGGTTCAGAGGAAGATGAAGGTGA
TCGAGAAGATCCAGGAGGCGGCGGCGAATGGCCGCACCGTCTTCTCCTTCGAGTACTTCC
CGCCCAAGACGGAGGAGGGCGTCGAGAACCTCTTCGAGCGGATGGACCGCATGGTGGCGC
ACGGCCCCAACTTCTGCGACATCACCTGGGGCGCCGGCGGATCCACCGCCGACGTCACCC
TCGACATCGCCAACCGCATGCAGAACATGGTATGCGTGGAAACGATGATGCACTTGACGT
GCACCAACATGCCAGTGGAGAAGATTGATAATGCTTTGGATACCATTAAGAACAATGGGA
TTCAAAATGTTCTCGCACTTAGAGGAGATCCTCCACATGGTCAGGACAAATTTGTCCAAG
TTGCTGGTGGATTTTCTTGTGCTCTAGATCTGGTGCAGCATATTAGAGCCAAGTATGGTG
ATTACTTTGGCATAACTGTCGCTGGGTATCCAGAGGCACACCCTGAGGTAATACTAGGTG
AGGACGGGGCTACAGAGGAAGCATATAGCAAAGATCTTGCTTACTTGAAGAGAAAGGTTG
ATGCTGGCGCTGACGTTATAGTTACCCAGCTTTTCTATGATACCGACATCTTCCTCAAAT
TTGTGAACGATTGCCGTCAGATTGGTATAACCTGCCCTATCGTTCCTGGCATAATGCCAA
TAAATAACTACAAGGGATTTGTGCGCATGACCGGATTTTGCAAAACTAAGATACCAGCTG
AGATTACTGCTGCCTTGGATCCTATTAAAGACAATGAGGAGGCTGTGAAAGCATATGGAA
TCCACCTTGGTACTGAGATGTGCAAGAAAATTTTGGCTAGTGGGATCAAGACTTTGCACC
TTTACACACTAAACATGGAAAAGACCGCTTTAGCAATTCTGATGAATCTTGGATTAATAG
AGGAATCCAAGCTTTCAAGAACATTACCTTGGAGGCCACCAACTAATGTTTTCCGTGTCA
AAGAGGATGTTCGCCCTATATTCTGGGCCAACAGACCAAAGAGTTACATTTCAAGGACCA
CTGGTTGGGATCAATACCCACAGGGGCGGTGGGGTGATTCCAGGAACCCATCATACGGAG
CCCTTAATGACCACCAGTTCACACGGCCACGTGGGCGTGGTAAGAAGCTCCAAGAGGAAT
GGGCTGTTCCACTGAAATCTGTGCAAGACATTAATGAGCGGTTCGTAAACTTCTGTGAAG
GAAAACTTAAAAGCAGCCCATGGTCTGAGTTAGATGGTCTTCAACCCGAGACAACGATAA
TTGATGATCAGCTGGTGAAGATGAACTCAAAGGGTTTCCTTACCATCAACAGCCAACCTG
CTGTAAATGCAGAGAAATCTGAGTCTCCTAGTGTTGGATGGGGCGGTCCAGGAGGCTATG
TTTACCAAAAGGCCTACGTCGAATTCTTCTGCGCTAAGGAGAAGCTGGACCAACTCATCG
AGAAGAGCAAGGCATTCCCTTCCCTCACATACATCGCGGTGAACAAGGAAGGGGAATCGA
TCTCAAACATCCCTGCGAACGCCGTGAACGCTGTCACTTGGGGCGTGTTCCCCGGCAAGG
AGATCATCCAGCCTACCGTCGTTGACTCGGCGAGCTTCATGGTTTGGAAAGATGAAGCGT
TTGAGATCTGGTCCAGGGGATGGGCCTGCCTGTTCCCGGAGGGTGACTCATCCAGGGAGT
TGCTAGAGCAGGTGCAGAAGACCTATTGCCTGGTCAGCCTTGTGGACAATGACTACATCA
GCGGGGACCTCTTTGCTGCATTCAAGGAGATCTAATTTCGATGATATCTTAAGTGTTTGA
CCGCCCTTCGTTAGAATCCTGTAATACGATCTGTCGTGATTTGTGTCGATTTATCCAAAC
CACTCAATATGAATAAGAATTTTTGATATGTGTTCCTTCTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK250029.1	1965	0.0	11 - 1965	99	1953 / 1955	None	ABC03235 ABC03237
MLOC_74700.1	1009	0.0	99 - 1009	100	911 / 911	None	ABC03235
MLOC_75137.1	747	2e-177	210 - 547	100	338 / 338	None	ABC03235
AK356204	1760	6e-124	1029 - 1291	97	256 / 263	CUST_7477_PI390587928	ABC03235 ABC03237 ABC25388 ABC30667 ABC31592 ABC46432
MLOC_46314.1	285	4e-115	1 - 238	98	234 / 238	None	ABC03235 ABC03237
MLOC_22788.1	787	7e-108	218 - 430	100	213 / 213	None	ABC03235
AK361743	2120	2e-98	1763 - 1970	98	204 / 208	CUST_30070_PI390587928 CUST_30688_PI390587928	ABC03235 ABC25388 ABC31592
MLOC_63513.2	214	3e-92	17 - 213	98	193 / 197	None	ABC03235
MLOC_63513.1	214	1e-80	17 - 214	95	188 / 198	None	ABC03235
MLOC_22787.1	159	5e-55	1 - 118	100	118 / 118	None	ABC03235