barSeed - Barley Seed Development Database

Probe CUST_7363_PI390587928

Source Contig U35_38600

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7363_PI390587928	Hv_44K_v2	TGAAGACTAATCATTTTATCATCTGTCTGCTTTCGAATGCTGCTACTTGTATACTTACCT	89	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69283.1	399	2e-24	121 - 180	100	60 / 60	minus	ABC00668 ABC49876
JLOC1	JLOC1_45895.1	399	8e-25	121 - 180	100	60 / 60	minus
Harvest35	U35_38600	600	3e-25	90 - 149	100	60 / 60	minus

Contig Sequence (600 bp)

>U35_38600 600 Hv_44K_v2
TTTTTTTTTTTTTTTTTACAAAGAAAATTGCATTTATTACTATCCAAGGAAGCTTATTTC
GGATATGCATTGGCCTAGATGGTGATCAAAGGTAAGTATACAAGTAGCAGCATTCGAAAG
CAGACAGATGATAAAATGATTAGTCTTCAGAAGCATCCATGTTTTCCCGAAAGCCGAAAT
AACACGACAGTACTCAAATGACACATCAACAGGGCGCATATCACACGGCGCTAACAGTAG
CAAAACTTACTAAACTACTAGAGAGATCTCAAAAGCAAGACATAGATGGATTCAGGTAAA
CGCCTCTATTTCTTCTTGATGGCAGCCTTGGTCACCTTGGCTCCGGTGGGGTCCTTCTTC
TCCACGCCCTTGATGACACCAACAGCCACAGTTTGCCTCATGTCACGGACAGCAAAACGA
CCAAGAGGAGGGTAAGTGGCAAAGGTCTCCACAACCATGGGCTTGGTGGGAATCATCTTC
ACTATACCAGCATCACCATTCTTGAGGAACTTGGGCAGGGCCTCCAGCTCCTTACCTGAT
CGCCTGTCGATCTTGGTCACCAGCTCAGCAAACTTGACAGCAATGTGTGAGGTGTGGCAG

Homology of Contig U35_38600 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None