barSeed - Barley Seed Development Database

Probe CUST_7360_PI390587928

Source Contig U35_38603

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7360_PI390587928	Hv_44K_v2	TGTACCTGAATTATTTGATTGCCAGATATTTATCCGAATGAGGCTCAACCTCCTAAACAT	476	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59320.1	747	2e-24	40 - 99	100	60 / 60	minus	ABC01908 ABC01909 ABC01910
JLOC1	JLOC1_38597.1	825	8e-25	622 - 681	100	60 / 60	plus
Harvest21	ABC01908	731	3e-25	507 - 566	100	60 / 60	plus	ABC01908
Harvest21	ABC32190	642	6e-22	533 - 589	98	56 / 57	plus
Harvest35	U35_46919	527	3e-25	168 - 227	100	60 / 60	minus
Harvest35	U35_38603	536	3e-25	477 - 536	100	60 / 60	plus
Harvest35	U35_14759	619	3e-25	507 - 566	100	60 / 60	plus

Contig Sequence (536 bp)

>U35_38603 536 Hv_44K_v2
CGCCGCTCGGAGCAAGCGCCGCAGGGGACGCCGCCATGTCGAAGCGCGGGAGGGGAGGAT
CGGCGGGGAACAAGTTCCGGATGTCGCTGGGTCTGCCGACAACACGGGCGCCAAGAACCT
GTACATCATCTCCGTGAAGGGCATCAAGGGAAGGCTAAACCGCCTGCCGTCGGCCTGCGT
CGGCGACATGGTCATGGCCACCGTCAAGAAGGGGAAGCCCGACCTCAGGAAGAAGGTCAT
GCCGGCTGTCATCGTGCGCCAGCGCAAGCCATGGCGCCGAAAGGACGGTGTCTTCATGTA
CTTCGAAGATAATGCTGGGGTGATTGTGAACCCTAAGGGTGAGATGAAAGGATCTGCTAT
CACAGGACCCATTGGTAAGGAGTGTGCTGACCTCTGGCCTAGGATCGCTAGCGCCGCAAA
TGCCATTGTCTGAGGAGCTTGTTTGGGATAATGATATGTTTCCTTAGTTTCAGTTTTGTA
CCTGAATTATTTGATTGCCAGATATTTATCCGAATGAGGCTCAACCTCCTAAACAT

Homology of Contig U35_38603 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g32920.1	141	5e-76	protein\|ribosomal protein, putative, expressed
Brachypodium v1_2	Bradi3g55140.1	141	8e-77
Arabidopsis v10	AT3G04400.1	140	3e-76	\| Symbols: emb2171 \| Ribosomal protein L14p/L23e family protein \| chr3:1167339-1168308 FORWARD LENGTH=140