barSeed - Barley Seed Development Database

Probe CUST_7288_PI390587928

Source Contig U35_38622

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7288_PI390587928	Hv_44K_v2	CGTGGTACTGGCACTTTGTTTTGATGTCTCTCGATGTTAAAACTTAGATTATATATCTGT	35	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361008	1917	2e-24	1838 - 1897	100	60 / 60	plus	ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00685 ABC00827 ABC00901 ABC01003 ABC36959
MLOC	MLOC_20444.1	1330	2e-24	715 - 774	100	60 / 60	minus	ABC00297 ABC00331 ABC00413 ABC00536 ABC00685 ABC00827 ABC00901 ABC01003 ABC36959
MLOC	AK250137.1	2948	7e-23	2782 - 2841	98	59 / 60	plus	ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00626 ABC00685 ABC00827 ABC00901 ABC01003 ABC36959
MLOC	MLOC_64334.1	2298	7e-23	1543 - 1602	98	59 / 60	minus	ABC00297 ABC00331 ABC00413 ABC00536 ABC00685 ABC00827 ABC00901 ABC01003 ABC36959
JLOC1	JLOC1_14165.1	1005	8e-25	390 - 449	100	60 / 60	minus
JLOC1	JLOC1_42232.1	958	4e-23	203 - 262	98	59 / 60	minus
Harvest21	ABC00901	2854	3e-25	2756 - 2815	100	60 / 60	plus	ABC00901
Harvest21	ABC00827	857	1e-23	21 - 80	98	59 / 60	minus	ABC00827
Harvest21	ABC00677	1978	1e-23	1874 - 1933	98	59 / 60	plus
Harvest35	U35_38622	674	3e-25	36 - 95	100	60 / 60	minus
Harvest35	U35_373	2860	3e-25	2756 - 2815	100	60 / 60	plus
Harvest35	U35_141	859	1e-23	778 - 837	98	59 / 60	plus

Contig Sequence (674 bp)

>U35_38622 674 Hv_44K_v2
CTTTTTTTTTTTTTTTTGTTTTTGCCAGTATCACAACAGATATATAATCTAAGTTTTAAC
ATCGAGAGACATCAAAACAAAGTGCCAGTACCACGACAGATAGGACATTGCAATAGCAAT
ACAGCGACGGACTCAATAGACAGAAAATAGCGCAGCTCTCTTAGCAGCATAAAGCAAACT
AGACCATGTAACAGAATCAGAAGTTCAGAGCTTGTCCTCGAAATCAGATAGAGGGGTCAT
CTGTTCCTTGAGACCCTTGCGCTTGCGGATCTCCGTGACAAGGGTGGCAGACTGGGAGCC
GGCCTCCAGAGGATCAGAAGACATGATGTCCCAGTGGTCAAACACACACTGGGGGAAAGC
CTGGCCAGATGTAGCTGCCCTGAGGGTACTTGAGAACCCGAAGGACTCGATGACCGGGAG
GTAAGCCTTGATGTTGTACAGCGGGGTACCAGGCACACAGGCTCCAGCAGCCTTGGCTTA
GCAGTGAGCTGAGAAGCGTAAATGACCCTCCTGGCTGTTGGGATGACCTGGCCACCACCC
CTGTGAATAGCATCAGTGTGCAGAACAACATCACAGACCTNNCAAGCAATGCCACGCATG
TTCTCCTCAGCCAATGCACCTTCCTTTGATGCCCATTGGAACCCAGCCCACACAGAATCC
TTGATTTCATTGAG

Homology of Contig U35_38622 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g32030.1	844	6e-74	protein\|elongation factor, putative, expressed
Brachypodium v1_2	Bradi3g44480.1	844	4e-77
Arabidopsis v10	AT1G56070.1	843	1e-70	\| Symbols: LOS1 \| Ribosomal protein S5/Elongation factor G/III/V family protein \| chr1:20968245-20971077 REVERSE LENGTH=843