barSeed - Barley Seed Development Database

Probe CUST_7284_PI390587928

Source Contig U35_38627

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7284_PI390587928	Hv_44K_v2	TGTCCCAAGGAATTGTTTGTACTACATTCCATAGGAAATCTAGCATCCATTCTAAATTCT	67	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358907	1478	2e-24	1319 - 1378	100	60 / 60	plus	ABC02680 ABC02681 ABC02683
JLOC1	JLOC1_45841.1	772	8e-25	626 - 685	100	60 / 60	plus
Harvest35	U35_38627	655	3e-25	68 - 127	100	60 / 60	minus

Contig Sequence (655 bp)

>U35_38627 655 Hv_44K_v2
TTTTTTTTTTTTTTTTTGATTTAAGTTTATTTCATTGCATCATAGAGAAAACAAAGGATT
GTTTTCAAGAATTTAGAATGGATGCTAGATTTCCTATGGAATGTAGTACAAACAATTCCT
TGGGACAAATCTACAAGATACAATTCTACTAATCAAACGGCCTACATAGGAAAAATTACA
AAGGATTTCAATTCTATAAAAATCCTTTGAATCAAAGAGGCTCTTTATTTGACAGGAAAA
TAGCTAATTCCAACTACATCAGAGGAAAGGCGCTGCCCAAACGTCAAATTGCAAAGGCCC
TACCCGCAATGTTCTTTGTCGAGGGCATACCGGCATTAACATCTCCTTCAATGCCACATT
CATTTGTGCCCCTTATGATCTTGAAGTACCCGTCATCGCCCCATCCTCTGTTCCACTGAT
TTGCAAGAAGCCAGTAATCCTCGCCAGCATCACTTGTTCCCCATCCAATCAATTTGGCGG
CATGACCTCCCACCATCCTACCAGTGATTTGCTTGTAAACACCTGACTTGTAGTGTGCAA
AGTCCTCATAAATTATGAAAGAAACTTCTACAGGGCCATTCTTGTAGGATAAGCAGGTTC
ACATCCAGGATGCTGGCAACCAACCCTGATCAAGAATGGATCGCACTCGTCAGTA

Homology of Contig U35_38627 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g24550.1	435	1e-55	protein\|Papain family cysteine protease domain containing protein, expressed
Brachypodium v1_2	Bradi1g09737.1	352	1e-54
Arabidopsis v10	AT1G02305.1	362	4e-51	Cysteine proteinases superfamily protein \| chr1:455816-457974 FORWARD LENGTH=362