barSeed - Barley Seed Development Database

Probe CUST_6730_PI390587928

Source Contig U35_14551

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6730_PI390587928	Hv_44K_v2	TTCATTCTTTAAAAGTTGGGTTTACAGGAGCTCCTCCTCCTCAACCATGCCAAGATGGCA	726	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357400	1526	2e-24	1015 - 1074	100	60 / 60	plus	ABC08690 ABC14383
MLOC	MLOC_51260.3	1372	2e-24	1062 - 1121	100	60 / 60	minus	None
Harvest21	ABC00667	653	3e-25	529 - 588	100	60 / 60	plus
Harvest35	U35_14551	851	3e-25	727 - 786	100	60 / 60	plus

Contig Sequence (851 bp)

>U35_14551 851 Hv_44K_v2
CCGATGCAGAGTGCCGCTGCTGAAGGAACCTGTACATCAAGGCAATACGAGCTCATTCCT
TCACTCCCGCGCCCGCGCTTCCGCAGATCCGCGTTCGAGTCGTGCGTCCCCAGGCCTTCG
CTCTCCCGGCCACCCGTCCCGCGCTCCGCTATAGCTACCACCGGCCGCTCTCCCCCACCC
CACCTCACAAACCGATCCCACCGGTGACCCCATCCCCCCACCGATCAACCAGCTAGGGTT
TCGTCCCCTTCGTCTTCTCCGCCGAGCTTGGAGAGTTCGTGCTCATTGCCTGAGGCGAGA
TGTTCGGCCGCGGGCCGCCGAAGAAGAGCGACAGCACGCGCTACTACGAGATCTTGGGCG
TGCCCAAGGACGCGTCCCAGGACGACCTCAAGAAGGCCTACCGCAAGGCCGCCATCAAGA
ACCACCCCGACAAGGGCGGTGACCCCGAGAAGGCGACCCGGCTCGGCGCGGCGCAGAACT
GCTCGGCGATGCTCGCCGGCAACCACCTCATGCGGGACGCCGCCGCGCTCCCGGAGACCA
AAGACTGGAGGGAGGATGGGATCGTTAGCCCCGTCAAAAACCAGGCCCATTGCGGCTCCT
GCTGGACGTTCAGGTAACTACTGAATTTCTGCAGTGCTGTTTTTTTCCCACACGTGCCCC
TGTATCAGTAATAACCCTTGATTATGTTTCTAACTTCTCATAATTTTTTATTTGCATATG
CTGGCCTTCATTCTTTAAAAGTTGGGTTTACAGGAGCTCCTCCTCCTCAACCATGCCAAG
ATGGCAGCGGCGCGATGCCGGTCGAGGACGTCGGCGTGTAGTCGCCCGAGGCGTCGCCGG
GGTGCTACGTG

Homology of Contig U35_14551 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None