barSeed - Barley Seed Development Database

Probe CUST_664_PI390587928

Source Contig U35_14069

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_664_PI390587928	Hv_44K_v2	CGTCTGATCCTTTGTATCGTGATGCTTGAATGAAATTGCAATGGAAAAGTTCAGTTAAAA	580	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251714.1	648	7e-23	585 - 641	100	57 / 57	plus	ABC00014 ABC00040 ABC00041 ABC00075 ABC00082 ABC00094 ABC00102 ABC00105 ABC00106 ABC00124 ABC00126 ABC00130 ABC00135 ABC00136 ABC00141 ABC00176 ABC00186 ABC00196 ABC00201 ABC00204 ABC00338 ABC00349 ABC00484 ABC00570 ABC00657 ABC00660 ABC00669 ABC00672 ABC00676 ABC00684 ABC00701 ABC00787 ABC00971 ABC31599 ABC32001 ABC32138 ABC47839
MLOC	MLOC_24170.1	424	7e-23	118 - 174	100	57 / 57	plus	ABC00106 ABC00186
JLOC1	JLOC1_16635.1	268	4e-23	120 - 176	100	57 / 57	plus
Harvest21	ABC00106	653	3e-25	573 - 632	100	60 / 60	plus	ABC00106
Harvest35	U35_14069	654	3e-25	581 - 640	100	60 / 60	plus

Contig Sequence (654 bp)

>U35_14069 654 Hv_44K_v2
ACCGCCAAGCGAAATCCCAATCTCCAATCGCCACAGCCAGCAGCAGCGGCAGCAGCCAGA
TCCTTCTCCCCCATCTCCGATGGCCCGCACGAAGCAGACGGCGCGCAAGTCCACCGGCGG
CAAGGCCCCGAGGAAGCAGCTGGCGACCAAGGCGGCGCGCAAGTCGGCGCCGGCGACTGG
CGGCGTCAAGAAGCCCCACCGTTTTCGCCCGGGAACCGTCGCGCTCCGGGAGATCCGCAA
GTACCAGAAGAGCACGGAGCTGCTCATCCGCAAGCTCCCCTTTCAGCGCCTCGTCCGGGA
GATCGCGCAGGACTTCAAGACCGACCTCCGCTTCCAGTCCTCCGCCGTCTCCGCGCTCCA
GGAGGCCGCCGAGGCGTACCTCGTCGGGCTCTTCGAGGACACCAACCTCTGCGCCATCCA
CGCCAAGCGCGTCACAATCATGCCCAAGGACATCCAGCTCGCCCGCCGCATCCGCGGGGA
GCGCGCCTAGGTTGTGGGTCGCCGCTGGCTAGTAGCAGTCTTGTCCTGTGGTCCGGATGT
GTGTCCGGTGCTTCTGTTCGTTTGTGTTGATATGATGTGTCGTCTGATCCTTTGTATCGT
GATGCTTGAATGAAATTGCAATGGAAAAGTTCAGTTAAAAAAAAAAAAAAAAAA

Homology of Contig U35_14069 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g05730.1	137	6e-89	protein\|histone H3, putative, expressed
Brachypodium v1_2	Bradi4g07840.1	137	1e-89
Arabidopsis v10	AT5G65360.1	136	3e-89	Histone superfamily protein \| chr5:26120099-26120509 REVERSE LENGTH=136