barSeed - Barley Seed Development Database

Probe CUST_6636_PI390587928

Source Contig U35_765

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6636_PI390587928	Hv_44K_v2	CAACTGTGACAGACGTTCTTAACATGTATACAATGATCACCGGAAAGGCTATTGATCTCA	1386	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369742	1785	2e-24	1337 - 1396	100	60 / 60	plus	ABC02506 ABC02507 ABC17153
MLOC	AK359796	1270	2e-24	883 - 942	100	60 / 60	plus	ABC02506 ABC02507
MLOC	MLOC_12434.2	1451	2e-24	301 - 360	100	60 / 60	minus	ABC02506 ABC02507
MLOC	MLOC_12434.1	1413	2e-24	395 - 454	100	60 / 60	minus	ABC02506 ABC02507
JLOC1	JLOC1_8341.1	1315	8e-25	860 - 919	100	60 / 60	plus
Harvest21	ABC02509	796	3e-25	511 - 570	100	60 / 60	minus
Harvest21	ABC02506	1834	3e-25	1387 - 1446	100	60 / 60	plus	ABC02506
Harvest21	ABC02511	960	1e-23	296 - 355	98	59 / 60	minus
Harvest35	U35_765	1834	3e-25	1387 - 1446	100	60 / 60	plus

Contig Sequence (1834 bp)

>U35_765 1834 Hv_44K_v2
GCTGACCGAGTGCCCTCTCATGCGCACGCATCCGACTTCTTCCGGATTCCCGAACGCCCC
AACTGCTGCCCTTTCGTCAACTCCACTTCTCTCCACCCGGCGCCCCTTGCTCCCCGGAAC
CACCGCGACAAGCTCGCTGCGCCGCCGCCATGGATGAGGAGTACGACGTCATCGTGCTGG
GCACGGGGCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAGGTTT
TGCACATGGATAGAAATGACTATTATGGTGGAGATTCCACTTCTCTCAACCTTAATCAGC
TCTGGAAGAAATTTAGAGGGGAAGACAAGCCCCCGGCACATCTAGGCTCAAGCAAAGATT
ACAACGTAGACATGGTTCCAAAGTTTATGATGGCAAATGGGACATTGGTTCGAACCCTCA
TTCACACTGATGTAACGAAGTATTTGTCATTCAAAGCTGTTGATGGTAGCTTTGTCTTCA
GCAAAGGGAAGATCCACAAGGTTCCCGCGACTGATATGGAGGCTGTGAAGTCTCCTTTGA
TGGGCCTTTTTGAGAAACGCAGAGCAAGGAACTTCTTCATTTATGTCCAAAATTACGATG
AAGCTGATCCAAAAACACATCAGGGATTGGACCTTACTACGTTGACAACTAAAGAGTTGA
TAGCAAAGCACGGCTTAAGTGATGATACAGTGGATTTCATTGGCCATGCGCTTGCTCTCC
ATAGGGATGATCGCCACCTCAATGAACCAGCACTTGATACTGTGAAAAGGATGAAATTAT
ATTCGGAGTCTCTTGCACGTTTTCAAGGGGGCTCGCCTTATATTTATCCTCTATATGGGC
TGGGTGAGCTGCCACAGGGTTTTGCACGTCTAAGTGCTGTTTATGGTGGTACTTACATGC
TATGTAAGCCAGAATGCAAGGTTGAATTCGATATGGAAGGAAAAGCGTGTGGTGTTACAT
CAGAAGGTGAAACCGCAAAATGCAAGAAAGTTGTCTGTGATCCTTCGTACTTGACCAACA
AGGTCAGAAAGATCGGCAAAGTTGCACGTGCAATTGCTATTATGAGCCATCCAATCCCAA
ATACAAATGAGTCCCACTCAGTCCAGATTATTTTGCCACAGAAACAACTTGGACGCAATT
CAGACATGTATGTCTTCTGTTGCTCATACACCCACAACGTCGCACCAAAAGGGAAGTTCA
TTGCATTCGTCTCTGCAGAAGCGGAGAGTGATAATATACAATCCGAACTCAAGCCTGGCA
TTGATCTACTTGGTCCAGTGGATGAGCTCTTTTTTGATATGTATGACAGATATGAACCAG
TGAACGAACCATCTCTTGATAATTGCTTCATCTCAACGAGCTATGATGCTACCACACATT
TTGAGACAACTGTGACAGACGTTCTTAACATGTATACAATGATCACCGGAAAGGCTATTG
ATCTCACCGTTGATTTGAGTGCTGCTAGTGCTGCTGAAGAAGAATACTAGATTTCATAAT
TAAAAAAAAACGGCTATTCTCTTCAAACACCGCAGGACAAACCATAACAAACGTCCTGAC
TATTTCGCCCGCGGATCAAATTTGGTGTTATGGCCAGTGTCTTCCGCATGCCTGTCGCTT
GCAGCAAATATGGGAAAAAAATGTTGGTTCCAGACGATTGAACTATGGTGGTTTTATTTA
CTACTGTATACTAGAGTAATTAGTGAATGTTGTGAACAGTGAACAGGGTTGGCTATGAAC
TTTGTGGCTTTATGTATGTATCATAATAACTGTTAAAGTAAGTTTACAAGTCTGGCTAAA
AAAAAAAAAAAAATTCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_765 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os05g23860.1	446	protein\|rab GDP dissociation inhibitor alpha, putative, expressed
Brachypodium v1_2	Bradi2g25210.1	446
Arabidopsis v10	AT2G44100.1	445	\| Symbols: ATGDI1, AT-GDI1, GDI1 \| guanosine nucleotide diphosphate dissociation inhibitor 1 \| chr2:18241804-18244864 FORWARD LENGTH=445