barSeed - Barley Seed Development Database

Probe CUST_6622_PI390587928

Source Contig U35_16613

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6622_PI390587928	Hv_44K_v2	TAACTTTGATCTGACTGTTGGTGAACCTACGTACATCAAGGTGCTTTGGGCAACGTGAAG	426	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361385	757	2e-24	404 - 463	100	60 / 60	plus	ABC01159 ABC01179 ABC09234
Harvest21	ABC01179	992	3e-25	279 - 338	100	60 / 60	minus	ABC01179
Harvest35	U35_16613	759	3e-25	427 - 486	100	60 / 60	plus

Contig Sequence (759 bp)

>U35_16613 759 Hv_44K_v2
CCGGGAATCGGCATTACGGCGGGGACAGCGAAACACACAAGCGACTTATTTCCTTCAACA
ATATGGCTCTCCTCAAGAACTTGGCCGCGTACCTGTGCGTGATCCTGGCCTCGCTCGCCT
TCGTGGCGCAGGGCGCGCTCGCAGCCAGAAGGTGCTTTGAGCAACGTGAGGGGGTACACG
GTTAAGGACCCGCGCGGTGGTGGTGGTTATGGGAATGGGTATCCTCCATGATAGGCCGGA
GATGATGATACTTGGAGCACGGAAATACTACAAATAAGTCCGCGTACCATGAATAAATTT
GCACACGTTGCCGATATATAGTAAAACACAGTGATGCACGGTTTTACTCCCTCTATACCT
GAATAATTACAGTTGAAAAGAACTAGTCTAGTTTTCCTCAACTCGCCTCTTCCTCGTGTC
TAAGTGTAACTTTGATCTGACTGTTGGTGAACCTACGTACATCAAGGTGCTTTGGGCAAC
GTGAAGAGATACACGGTTACGGCCCCGCCCGGTGTGGGTTATGGAAGTGGGTATCCTCCA
TGATACGTCGGAGATGATGATACTTGGACCATGGAAATACTACAAATAAGTACGGCAGAC
CATGAATAAATTTGCACCTATTTCTCATATACAGTACTTTCTCCGTCTTAACATAAATGT
CCTTGATATAGCATAATGTTTTTACTGATGTAATACTAAATCTGCGACAATTATTTTATA
TTGTTACTATGTACTGTGTTCCCCTTTCCAAATAAACGC

Homology of Contig U35_16613 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None