barSeed - Barley Seed Development Database

Probe CUST_6587_PI390587928

Source Contig U35_780

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6587_PI390587928	Hv_44K_v2	AACTCAAGCTAGCTGAGGATTGTCGAATAGCAGCACAATTTAAGTGATGGCGGTAGGCAA	80	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37989.3	1986	2e-24	124 - 183	100	60 / 60	plus	ABC02996 ABC02999 ABC35448
MLOC	MLOC_37989.2	2247	2e-24	166 - 225	100	60 / 60	plus	ABC02996 ABC02999 ABC35448
MLOC	MLOC_37989.1	1196	2e-24	192 - 251	100	60 / 60	plus	ABC02996 ABC02999
JLOC1	JLOC1_24650.1	2478	8e-25	166 - 225	100	60 / 60	plus
Harvest21	ABC03000	829	1e-23	68 - 127	98	59 / 60	plus
Harvest21	ABC41351	190	6e-22	53 - 112	97	58 / 60	plus
Harvest35	U35_780	842	3e-25	81 - 140	100	60 / 60	plus

Contig Sequence (842 bp)

>U35_780 842 Hv_44K_v2
ACCCACACACACACCTCCTCGCCAAGAAGTCTGATCTTAGGCCGTCACACGCACCAAACT
CCATCAGTTCTCTCCACGACAACTCAAGCTAGCTGAGGATTGTCGAATAGCAGCACAATT
TAAGTGATGGCGGTAGGCAACGGCGGCGCCAAGAAAGTGGTGGCGCCAATGGAGGTGTCG
GTGGAGGCCGGGAACGGCGGGGACGAGGCATGGATGGACGACGACGGCCGGCCACGCCGC
TCCGGCACGTTCTGGACGGCGAGTGCGCACATCATCACGGCCGTCATCGGCTCCGGCGTG
CTATCGCTGGCCTGGGCCATCGCGCAGCTCGGTTGGGTGGCCGGCCCCGCTGTCATGCTC
CTCTTCGCCGCCGTTATCTACTACACCTCCACCCTGCTCGCCGAGTGCTACCGCACGGGT
GACCCGGCCACCGGGAAGCGCAACTACACCTATATGGACGCCGTCCGCTCCAACCTTGGT
GGTCCCAAGGTCATCTTCTGCGGTGTCATCCAGTACGCCAATCTCGTCGGCGTCGCCATC
GGCTACACTATCGCCTCCTCCATCAGCATGCGGGCCATCAGGAGGGCCGACTGTTTCCAT
GCCAATGGACACGCCGACCCTTGCAAGAGCTCCAGCAACCCATACATGATCCTCTTCGGC
CTCGTGCAGATCGTCTTCTCGCAGATCCCCGACTTCGATCAGATATGGTGGCTATCAATC
GTCGCCGCCGTCATGTCCTTCACCTACTCCGGCATTGGACTCTCCCTGGGCATCACCCAA
ACCATATCCAATGGTGGAATCAAGGGCAGCCTCACAGGCATCAGCATCGGCGTCGGTATC
AC

Homology of Contig U35_780 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g08090.1	476	7e-148	protein\|amino acid transporter, putative, expressed
Brachypodium v1_2	Bradi4g41040.1	480	5e-150
Arabidopsis v10	AT1G77380.1	476	3e-111	\| Symbols: AAP3, ATAAP3 \| amino acid permease 3 \| chr1:29075201-29077252 REVERSE LENGTH=476