barSeed - Barley Seed Development Database

Probe CUST_6544_PI390587928

Source Contig U35_4404

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6544_PI390587928	Hv_44K_v2	CTGAAGAGCCCAATAAAGTGATTTGCTAATTCTCATTTATATACTACTCTCTCGGTTTCT	1142	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361243	1917	2e-24	1825 - 1884	100	60 / 60	plus	ABC09506 ABC37822 ABC49680 ABC50194
JLOC1	JLOC1_9832.4	2238	4e-23	2028 - 2087	98	59 / 60	plus
JLOC1	JLOC1_9832.3	2093	4e-23	1883 - 1942	98	59 / 60	plus
JLOC1	JLOC1_9832.2	2072	4e-23	1862 - 1921	98	59 / 60	plus
JLOC1	JLOC1_9832.1	1898	4e-23	1688 - 1747	98	59 / 60	plus
Harvest21	ABC37822	588	3e-25	34 - 93	100	60 / 60	minus	ABC37822
Harvest35	U35_4404	1235	3e-25	1143 - 1202	100	60 / 60	plus

Contig Sequence (1235 bp)

>U35_4404 1235 Hv_44K_v2
AGACTACTACTATGCGTCAGCAAGATCTCTGTCGAGGAGCCCAGTGCCTACGGGTACATG
GTTGGGGAATAATCGCCAGACAACAAAATTTCCTCCACAAATGAACGACGAAGGTGAATC
TTTATTTGGTGAGTCTGTTCCACAGTCTGCACCAGCTGCTGTTACAAAAAATTCCCTCTT
GGTGGTACCATGGATTTCCGTTGTCTTGGGCATGTGTGTGTTGCATATTTTGGTTGGAAC
CGCACAAAGAGATGCGTCCAATGAAATTATCATCCCTGTCGGAAGAAAGCTCTTAGTTTT
AGCGGATGACCATGCAGGTTCATCTCTGAGCCATGGCAGTGGAAGTGGAATTGGAAGCTT
TCTTGGTTGGGCCATGGCAGTTATCTATATGGGTGGGCGACTTCCCCAGATCTTCTTAAA
TATGCAAAGAGGCCATGCCGAGGGGCTCAGTCCGCTAATGTTTACCTTTGCTTTGGTGGG
GAATACGACATATGTAGGGAGTATCCTTGTGAATAGTTTGGACTGGGCAAGACTTAGACC
AAATCTGCCGTGGCTTGTAGATGCTGGAGGATGTGTTTTGCTTGATTCTTTCATTATTTT
TCAGTTCCTTTATTTTCATTACCGGAAGCAAAGTGCGCGTGATGAACTATAGACAATTTG
GATAAAGCCTGATGCACAGGGAACGAAGTTAGATATGGGGCTACACCTGCATGGGGATTG
TGCGTTTTTCTTGGAAAGCTGCACAATAGCCACTCCCCGTGCAGAACTGCAGAGACAAGG
TCACACGCTTAATTTGCGGTGAATGAGCTGTGGCGCCGCATGGTTAAGGGATGAAATTTG
TTAAGGATAGATGCAGCAGTCTGCTGTGTTAGAATACAAAAAATGCGTACTCGGGGTCAT
GCTATATCTGTACATCGTATGGTGATTTGTGGTTCTTCATGGTATCTCTATTTTTGAAGC
GGTGACGTATGATCTGGCCATTGTCGTCGGATGCTCAGAATCTCATACGCATCCAGTCTC
CACCCTGACTCTAAATATGGTTCTGCATTACTCATTTGCAAGTTTTTCTTGTGTGGGACT
AACCCAATTTTATCCAAGTGTTCATCACATGAGCTGCGCACATTGACGTTTGCAAGTGAG
GACTGAAGAGCCCAATAAAGTGATTTGCTAATTCTCATTTATATACTACTCTCTCGGTTT
CTAAATATAAGCCTTTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_4404 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g16170.5	318	2e-81	protein\|PQ loop repeat domain containing protein, expressed
Brachypodium v1_2	Bradi2g09940.1	419	2e-100
Arabidopsis v10	None