barSeed - Barley Seed Development Database

Probe CUST_6349_PI390587928

Source Contig U35_3872

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6349_PI390587928	Hv_44K_v2	TGATGAATTGCAGAAATTGTACCCTAACCTTACCTCTTTTGTGGAGGAGATCCAGGCCCA	972	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363553	2844	2e-24	2284 - 2343	100	60 / 60	plus	ABC00064 ABC00146 ABC00541 ABC00668 ABC08988 ABC36822 ABC39327 ABC53030
MLOC	MLOC_12824.3	2216	2e-24	693 - 752	100	60 / 60	minus	ABC08988
MLOC	MLOC_12824.4	1474	2e-24	139 - 198	100	60 / 60	minus	ABC08988
MLOC	MLOC_12824.1	2101	2e-24	581 - 640	100	60 / 60	minus	ABC08988
MLOC	MLOC_12824.2	2174	2e-24	654 - 713	100	60 / 60	minus	ABC08988
JLOC1	JLOC1_8623.1	2175	8e-25	679 - 738	100	60 / 60	minus
JLOC1	JLOC1_8622.2	2127	8e-25	1450 - 1509	100	60 / 60	plus
JLOC1	JLOC1_8622.1	2188	8e-25	1438 - 1497	100	60 / 60	plus
Harvest21	ABC08988	1498	3e-25	973 - 1032	100	60 / 60	plus	ABC08988
Harvest35	U35_3872	1498	3e-25	973 - 1032	100	60 / 60	plus

Contig Sequence (1498 bp)

>U35_3872 1498 Hv_44K_v2
GGATCCCTCTCCGTCCGGCAAGGCCAAGAAGGCTAAGGCCGGGGCGGCGGAGAAGGCACC
CTCCGTGCTCACTCCTTCCAGTGAGGGTAAGAAGAAGCGCAAGGCCCAGCCGGAGAAGAC
TACACCGTGGAGCAAGCCTGAGAAACCTGGTCACCTCAGGCGCTGGACAGCCGAGGACGA
GCTCAAGATCCTGGAGGCTCTTGTTCACCACGTCAAGGCCAATGGCACCCGTCCGGGCGC
TGGTGAGCTTATTGCTGCGGTTGGTGGCAGCCTCGAAAGGAAGAACTGCACCAAGACGGA
AATATATGAGAAGGTGCGAACTCTTAAGCTGCGCTATGAGAAAGCGGTGAGCACAGGCGC
TCTGCCAGAGAAAGATGATGACCTCCGCAAGTTCAAGCTCTCGGAGCAAGTCTGGGGAGA
AAATGCAAAGCAGGTCGCTGCAGCCACCATGGCCCAAAATGAGGCTGCTTCCTCAAAGAG
CAAGAAGAAGGGGCAGACTAGCAAAGAGAAAACAGAGGGTTATTCAAAGGGTGGTACAGT
GAAGGAGGACACCACCATTGCCGTCGATGAAAATGTCGGAACTTCGACCGAGCTTAACAA
GGGGCAGGCCACCGAAGAGAAGGTAGACGAAGATAGCAAAGGCAGGTCATCAAAGAAAGC
TAGAACTGCTGATACTCCTGCTAAGAGTAGAAAGCGGGTAAACCACAAGGAGGAATTGGA
AGGCGATGCAAAAACTGGCACTGCAAAGGAGACTGTGGATACTACCGCTCAAAATGGTGG
CACTTCGGTGAGGAGCAAGAGTGGAAAGTCTGACAAAGAGAAAGCGGATGAAGATGCAGA
GAGCCCCACGCTAAAGGAGGATATGGCTGACACTCAAAATGCTGTCACCCTTGATCTGTT
TAAGAAGGAAGGGGAAACTCATGACGAGAAAATGGACACTGATGCTAACGTGAAAGGCAC
GCGCAAAGGTTTTGATGAATTGCAGAAATTGTACCCTAACCTTACCTCTTTTGTGGAGGA
GATCCAGGCCCAGCATCCATGTGGGGAGACACTGAAGAGAGTATTTGAGTTCATTAATGA
TGAGAAGGCATCTGCTTTGGAATCCAAGATCAAGAAGCAAAGAGTATCTGAGTTGAGGAT
GGAGATGCGCCGAGCTGACACAAAAAAGGAGGTGACCAACATATTTATAGGATTGCTGAA
CTAAGCCCTTCTGTTGTTGTCAACCCATTTATGCGAAAAACCGATTGAAGTATCAAAAGG
TTGCTTCAACGTGGAACTGATGGATGGGCGTGAGACATGGTGACGAGCTACTGTTGTGGC
CGGCTATTATTTTGTTTATGGTTGGTGGTGGTCAGCTGACTCATACTGTCTTATGCCAGT
ACCTATGTTGGTGTCATGTCTAGAAAATGTGGCGTGGTACTGCTGACTATGACTTGAATT
TCTGTTTCTTCTGCCCATTGAGTTGGTCTTCTTGGCTGTGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_3872 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g18660.1	579	4e-85	protein\|expressed protein
Brachypodium v1_2	None
Arabidopsis v10	None