barSeed - Barley Seed Development Database

Probe CUST_6340_PI390587928

Source Contig U35_4386

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6340_PI390587928	Hv_44K_v2	TGTTACTTATGGATCCATGTAATTTTCTTTTCCAATTGTGTGAATGGATGTGCTCCACGG	368	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372217	1124	2e-24	1052 - 1111	100	60 / 60	plus	ABC00034 ABC00088 ABC10998 ABC31141 ABC42591
MLOC	AK252573.1	491	2e-24	385 - 444	100	60 / 60	plus	ABC00034 ABC00050 ABC00088 ABC10998 ABC31141 ABC42591
JLOC1	JLOC1_54442.1	693	8e-25	504 - 563	100	60 / 60	plus
Harvest21	ABC10999	467	3e-25	369 - 428	100	60 / 60	plus
Harvest21	ABC31141	555	1e-23	368 - 427	98	59 / 60	plus	ABC31141
Harvest21	ABC00034	480	1e-23	369 - 428	98	59 / 60	plus	ABC00034
Harvest21	ABC42591	468	8e-21	24 - 85	95	59 / 62	minus	ABC42591
Harvest35	U35_4386	452	3e-25	369 - 428	100	60 / 60	plus
Harvest35	U35_31000	555	1e-23	368 - 427	98	59 / 60	plus
Harvest35	U35_904	491	1e-23	379 - 438	98	59 / 60	plus

Contig Sequence (452 bp)

>U35_4386 452 Hv_44K_v2
GTCAAGTTCAGGGTAAGCTCGATCCCATTTAGCTGCTCAAGGAATCGAGGATGAGCTGCG
CTGACCCAAAAGCACCCGCCGGTGAGGAGAAGAAGTCGTCATGGCCGGAGTTAGTGGGGA
AGTCCATCGAGGACGCCAGGGAGGTCATCCTCAAGGACATGCCTGAAGTGGACATCGAAG
TCCACCCTACCGACTCCGTGGTTTCCGCAGACTGGAGGAGCAACCGTGTCCGCATCCTCG
TTGACACTGTCGCGACCACTCCTCACATCGGCTAGCTAGCTACCTTTGCTCGCGGCAGGC
ATCACGTCTGCTGATGGCCAAGTAATAATTTCAATAAAGGATGAATTAGTGCGCGCTGAC
AACCAGCATGTTACTTATGGATCCATGTAATTTTCTTTTCCAATTGTGTGAATGGATGTG
CTCCACGGTTAATTAAAAAAAAAAAAAAAAAA

Homology of Contig U35_4386 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None