barSeed - Barley Seed Development Database

Probe ABC00034

Source Contig ABC00034

barSeed

Links

Affymetrix Source Sequence (480 bp)

>ABC00034 480
GTCAAGTTCAGGGTAAGCTCGATCCCATTTAGCTGCTCGAGGAATCAAGGATGAGCTGCG
CTGACCCAAAAGCACCCGCCGGAGAGCAGAAGAAGACGTCATGGCCGGAGGTAGTGGGAA
AGTCCATCGAGGAGGCCAAGGAGATCATCCTTAAGGACATGCCTGAAGCGGACATCGTCG
TCCTTCCTGCCGGCTCGCCGGTGACCATGGACTTCAGGAGCAACCGTGTCCGCATCTTCG
TCGACACTGTCGCGACCACTCCTCACATCGGCTAGCTAGCTACCTTTGCTCGCGGCAGGC
ATCACGTCTGCTGATGGCCAAGTAATAATTTCAATAAAGGATGAATTAGTGCGCGCTGAC
AACCAGCATGTTACTTATGGATCCATGTACTTTTCTTTTCCAATTGTGTGAATGGATGTG
CTCCACGGGTTAATTATTTGCAGTAAAAAAAATGCGTTTTCCCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK252573.1	491	0.0	16 - 488	92	441 / 480	CUST_27714_PI390587928 CUST_6340_PI390587928	ABC00034 ABC00050 ABC00088 ABC10998 ABC31141 ABC42591
AK372217	1124	3e-165	710 - 1124	92	382 / 415	CUST_27714_PI390587928 CUST_6340_PI390587928	ABC00034 ABC00088 ABC10998 ABC31141 ABC42591
MLOC_81846.4	385	6e-153	1 - 383	92	353 / 383	None	ABC00034 ABC00050 ABC00088 ABC10998 ABC31141 ABC42591
MLOC_81846.1	1093	7e-152	1 - 393	91	360 / 394	None	ABC00034 ABC00088 ABC10998 ABC31141 ABC42591
MLOC_81846.2	1223	8e-147	1 - 381	91	348 / 381	None	ABC00034 ABC00088 ABC10998 ABC31141 ABC42591
MLOC_81846.3	467	2e-133	1 - 348	91	318 / 348	None	ABC00034 ABC00088 ABC10998 ABC31141 ABC42591
MLOC_2643.1	583	3e-121	245 - 525	95	266 / 281	None	ABC00034 ABC00050 ABC00088 ABC00447 ABC00494 ABC01010 ABC31141
MLOC_34615.2	375	1e-104	122 - 375	94	238 / 254	None	ABC00034 ABC00050 ABC00088 ABC00447 ABC00494 ABC01010 ABC31141
MLOC_2643.2	733	6e-103	312 - 565	93	237 / 254	CUST_27712_PI390587928 CUST_27713_PI390587928 CUST_27710_PI390587928	ABC00034 ABC00050 ABC00088 ABC00447 ABC00494 ABC01010 ABC31141
MLOC_34615.3	425	2e-98	185 - 424	94	225 / 240	None	ABC00034 ABC00050 ABC00088 ABC00447 ABC00494 ABC01010 ABC31141
MLOC_34615.1	352	2e-88	140 - 352	94	201 / 213	None	ABC00034 ABC00050 ABC00088 ABC00447 ABC00494 ABC01010 ABC31141
MLOC_43333.1	206	6e-68	4 - 191	91	172 / 188	None	ABC00034 ABC00088 ABC31141 ABC42591
MLOC_43333.2	176	2e-52	3 - 156	91	140 / 154	None	ABC00034 ABC00088 ABC31141 ABC42591