barSeed - Barley Seed Development Database

Probe CUST_6215_PI390587928

Source Contig U35_23516

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6215_PI390587928	Hv_44K_v2	ATTCGGGGCCATAAGGTTAGGATTTCTCGTCATGCGTATGTGACGATAAGATTTGATGTC	1168	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_49356.6	3708	2e-24	1717 - 1776	100	60 / 60	plus	ABC04112 ABC37767
MLOC	MLOC_49356.3	4613	2e-24	2613 - 2672	100	60 / 60	plus	ABC04112 ABC25578 ABC37767
MLOC	MLOC_49356.2	5366	2e-24	3375 - 3434	100	60 / 60	plus	ABC04112 ABC25578 ABC37767
JLOC1	JLOC1_31600.2	4573	8e-25	1939 - 1998	100	60 / 60	minus
JLOC1	JLOC1_31600.1	3197	8e-25	1250 - 1309	100	60 / 60	minus
JLOC1	JLOC1_31599.2	4041	8e-25	2733 - 2792	100	60 / 60	plus
Harvest21	ABC37767	390	3e-25	33 - 92	100	60 / 60	minus	ABC37767
Harvest35	U35_23516	1260	3e-25	1169 - 1228	100	60 / 60	plus

Contig Sequence (1260 bp)

>U35_23516 1260 Hv_44K_v2
GCACATCCCCTGCTCCCCGCGGGAGTTGTGGCAGTCCCCTGAAATTTACACACGGTAATC
ACCAGCTCATACACGCTTGCTTGATGCCCAAACTCAACACCACAACACAAACCATAACAA
CAGATGCTACCATTTTGACGACCACATGTAATATATCCAGTAGTGGTGGGCAGTATATGT
ACACTCCATTAATAATACTAGGATAGTAGTGTGTGAGCTCGTCCATCATCATCCATGTGA
CCATGTGATTGTGATTTCAAGGCCACATGCCGCGCAGCCGAAAGGGAACAAAGTCCAGCA
ATATTTTGTTGTCGCCGGATCGGATCGGAATCGGATAGCAGCAGTATCACTCGGCCTCAC
TTGCCCACGTGCAGTTTTTCTCTTTTGAGCGAGTGCAGTTATTATGTAGGTGATCTGAGA
CGGAGGAACACTGTCTGCTCTGTTCTGCTCTGCTCTCACGAAAACGACGATCGGTTTGGC
AGAAGGAATCGTACGTGTTGGTGGACGCGTGAAGCAAGCAAACTGATCAGTGAGCTGAGA
GAGTGGGAGCATCCTTCGTCTCGACACAACCTCTCGCCCTCTCCAACAAGCAACATCAAG
ATAGCATATGCGATCGGCGTGTGCAAGCAAAGGATCCGCCGATATGCCTCCCTCACACCG
GCAGCCAACCTTATCTAGTAAAATCATTTATATTTATCTTCCTTTATGTTGTAAAAATAC
TTTAAGCTAATTATTATTTTCTTTGATTTTAGCTAACCCCCCCGTTGGCCGACCGGTCGT
CTTTCTTTACCCTTTCACAAGGCGGCCAGGGTACAACCTTCCTCCCATGCCGGCGAGGTC
CGTGGATCCGCCTTCCCCTCCGCCTGCTATTCCATCGGTCGGTGGCGGGGAGGAGCATAT
TGGTGCATCGGCTCGTAGATGACTTAGGGTTTTTCTCCTCACAGGCACGACATTCGGATG
GATGGCGACGCTTCTTCTTCGAGCCAGTCTTTCGGACTTCGATCCTCCTCCTGTTCGTCT
GTCGGGATGGATTAGACTGAGCTTCTAATTCGTCTGTCGGCATGGATTAGACTGAGCTTC
TAATTCGAGTTAGTCGCCTAGACTTCGAGCCTCCTCTAGTTTGTTCATTGGGACGGATTA
GGAACTCTGGTGTAGATTCTTGTCAGTTATTCGGGGCCATAAGGTTAGGATTTCTCGTCA
TGCGTATGTGACGATAAGATTTGATGTCAAGTTTTTTATAACTAAAAAAAAAAAAAAAAA

Homology of Contig U35_23516 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None