barSeed - Barley Seed Development Database

Probe CUST_6154_PI390587928

Source Contig U35_23540

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6154_PI390587928	Hv_44K_v2	TGTCGATGGCTTGTTCAACTATGACGAATTGCTCAACAACGCCGGCCTGCTCGACGACGC	703	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368567	1545	2e-24	725 - 784	100	60 / 60	plus	ABC09031 ABC09032 ABC09757 ABC24230
MLOC	MLOC_40873.2	522	2e-24	406 - 465	100	60 / 60	plus	ABC09031
MLOC	MLOC_40873.1	588	2e-24	466 - 525	100	60 / 60	plus	ABC09031 ABC09757
JLOC1	JLOC1_26689.2	743	8e-25	633 - 692	100	60 / 60	plus
JLOC1	JLOC1_26689.1	575	8e-25	465 - 524	100	60 / 60	plus
Harvest21	ABC19250	812	3e-25	704 - 763	100	60 / 60	plus
Harvest35	U35_23540	812	3e-25	704 - 763	100	60 / 60	plus

Contig Sequence (812 bp)

>U35_23540 812 Hv_44K_v2
ATAATCACCTCTCACATATCATATCTAGCTCTTCTTCCTCCTCAGCTACCGTTTCATCCT
GACTCCTGGGCTTAGCAAGCCAAGCGAGTAGATCCGAGATCAGGGCGCGGCTAGCCATGT
CGGACGTGACGGCGGTGATGGATCTGGGGGTGGAGGAGCCGCAGCTGTCGCTTCCACCGG
GGTTCCGGTTCCACCCCACCGACGAGGAGGTGGTCACCGACTACCTCACCCGCAAGGTCC
TCCACGAATCCTTCTCCTGCCAAGTGATCACCGACGTCGACCTCAACAAGAACGAGCCGT
GGGACCTCCCTGGCCTGGCGAAGATGGGGGAGAAGGAGTGGTTCTTCTTCGTGCACAAGG
GCCGGAAGTACCCGACGGGGACGCGCACCAACCGGGCCACAGAGCGCGGCCACTGGAAGG
CGACGGGGAAGGACAAGGAGATCTATCGCGGCAAGGTCCTTGTCGGCATGAAGAAGACGC
TCGTCTTCTACACCGGCCGCGCCCCCAGCGGCGGGAAGACGCCGTGGGTGATGCACGAAT
ACCGCCTCGAGGGCCAGCTGCCCCATCGCCTCCCCCCCACCGCCAAGGACGATTGGGCAG
TCTGCCGGGTGTTCAACAAAGACTTGGCGGCGGCGGCGAAGAATGCGCCCCGGATGGCGC
CGGCGGCCGACGGGGCCATGGAGGACCCGCTCGCCTTCCTCGATGTCGATGGCTTGTTCA
ACTATGACGAATTGCTCAACAACGCCGGCCTGCTCGACGACGCCGACCTGCCGATGCTCA
TGGACTCTCCGTCTGGCGCCGACGACTTCGCC

Homology of Contig U35_23540 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g48550.1	302	4e-87	protein\|no apical meristem protein, putative, expressed
Brachypodium v1_2	Bradi1g17440.1	303	3e-88
Arabidopsis v10	AT5G61430.1	336	2e-79	\| Symbols: ANAC100, ATNAC5, NAC100 \| NAC domain containing protein 100 \| chr5:24701328-24702553 REVERSE LENGTH=336