barSeed - Barley Seed Development Database

Probe CUST_5723_PI390587928

Source Contig U35_8157

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5723_PI390587928	Hv_44K_v2	ATATGTTTGCCAGGCCGGCCCATCACTTGTCAAAGAAGTGTACTCTAACTTTCCTGGAAA	742	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370718	2352	7e-23	2252 - 2311	98	59 / 60	plus	ABC12316 ABC16415 ABC43123
JLOC1	JLOC1_7956.3	1510	4e-23	1421 - 1480	98	59 / 60	plus
JLOC1	JLOC1_7956.2	1781	4e-23	1692 - 1751	98	59 / 60	plus
JLOC1	JLOC1_7956.1	1478	4e-23	1389 - 1448	98	59 / 60	plus
Harvest35	U35_8157	816	3e-25	743 - 802	100	60 / 60	plus

Contig Sequence (816 bp)

>U35_8157 816 Hv_44K_v2
CACGCGTCCGCGTCCGTGGCACTTGGAGTTCCTGTTGACAGGCTTGTGAGAGCTGCCGAC
TCAGTTTCGGTATGCCTATCGAAAGGTTTGGGTGCTCCTGTTGGATCGGTTATTGTTGGT
TCTAAGGCCTTCATAGACCAGGCTAGGATACTGAGGAAGACACTAGGTGGTGGAATGAGG
CAGGTAGGAGTTCTATGTGCTGCTGCCTATGTTGCAGTTCGCGACAACGTAGGCAAGCTT
GCCGATGACCACAGGAAGGCTAAAGTATTAGCAGATGGGCTGAAGAAAATTAAACAGTTT
ACAGTTGATTTAACTTCAGTGGAGACCAATATGGTATTCTTCGACATCGCGGATCCACGC
ATAACATCTGACAAACTGTGTCAACTCCTGGAACGGCGCAATGTGCTTGCGATGCCAGGA
ACCTCCAAGAGCGTCAGACTTGTCATTCACTACCAAATTTCAGATAGTGACGTCCAGTAT
ACTTTGACATGTATCGAGAAAGCTGTGGAGGAAATACTGTCAGGCAGTGCAAAGTTCGAG
CACTTGACAAACGGCAGTACCACGAACTCATATGGGCACTAGGCCACTTCCTTCTGCGCC
CACCTATGAAGAAGGGCAGTATCTAGCTTGTTTGTGGCCTTGGCCCTTTGTAGTAGTAAC
AACTTTGCAGAATAATATGTTGCTCTTTGGGCCGATGGAAGTCCCCCCACACTGAACTTT
GTGTTTGTGCATGCCCGGATGGATATGTTTGCCAGGCCGGCCCATCACTTGTCAAAGAAG
TGTACTCTAACTTTCCTGGAAAAAAAAAAAAAAAAA

Homology of Contig U35_8157 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g43650.2	373	2e-107	protein\|L-allo-threonine aldolase, putative, expressed
Brachypodium v1_2	Bradi5g15710.1	373	2e-112
Arabidopsis v10	AT3G04520.1	355	8e-64	\| Symbols: THA2 \| threonine aldolase 2 \| chr3:1217397-1219571 REVERSE LENGTH=355