barSeed - Barley Seed Development Database

Probe CUST_5634_PI390587928

Source Contig U35_1672

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5634_PI390587928	Hv_44K_v2	GCATTCATTGCCAGAAAAGTTCCATTGGAAAATACAGATTTGCTTTCATGGGAATGTTTC	432	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373999	1880	2e-24	412 - 471	100	60 / 60	plus	ABC09264 ABC12547 ABC26240
MLOC	AK375292	2079	2e-24	412 - 471	100	60 / 60	plus	ABC09264 ABC12547 ABC26240 ABC47626
MLOC	MLOC_38387.1	1984	2e-24	281 - 340	100	60 / 60	plus	ABC09264 ABC12547 ABC26240 ABC47626
MLOC	AK358017	1420	3e-21	536 - 595	97	58 / 60	plus	ABC09264 ABC26240 ABC46402
JLOC1	JLOC1_24956.1	2160	8e-25	281 - 340	100	60 / 60	plus
Harvest21	ABC09263	772	3e-25	421 - 480	100	60 / 60	plus
Harvest21	ABC48068	648	6e-22	369 - 428	97	58 / 60	plus
Harvest35	U35_1672	784	3e-25	433 - 492	100	60 / 60	plus

Contig Sequence (784 bp)

>U35_1672 784 Hv_44K_v2
GCGCACACCCCACAAATGAAGCGGGTTTCTTAAACTCGACGGAAGAGAAGGCACGCGCCG
CCGCGGGGTGGAGACGATGGCCCCCGCCGCCGCGGCGCCGGCGCCGGCCGCCACCGCCTG
CTCCTCGTCGGCGAGCTCCGCGCGCCCGCCCTCCACCGCCTCCTCCTCCCAGTCGCCGCC
CAGGCGCACGGTCCCGGCGCTCCTCCTCTTCATCTCCCTCGCCGCTCTCCTCATCCTCTC
CTCCGGCGAGGCCCACGACCCCGACGCCGACTCCGGGCGCCCCCTCAAAGACGTTAGCTT
GGAATATCCGGAGGTGACTTTTGCTCCCTCATCCATGGGTGGAATTTTCTGTGAGCGAAT
CCGCATATCTAAAATACCAAGGTGGCAGTTTCAAAGCTATGCAAATCAAATACATATAAG
AATGAATGTCTCGCATTCATTGCCAGAAAAGTTCCATTGGAAAATACAGATTTGCTTTCA
TGGGAATGTTTCTACCGGTCTGTGCCAATGTGAGATGGGTGAATGGCAAGCTCTGCAAGG
TGGCACGTGGAATGCTGTCAAGTCTCCGTATAACAGCAGATATGTTGATGTGAAACTTAC
TGATAAGAAATCTGCTGTCTTCAGCCTTTCCATTCAAGAAGAGCTTCAGAAGTGGCGTTT
AGCTTGCCTTGGTATTGGATTTGTTCTGCTATTCCTGTCACCCATCGTTAGTAAATGGGC
ACCATTTTACTATAGCAGCTCTATGGCTCTTGGAATCCTACTTGNGGTGCTGATTGTCCT
TTTC

Homology of Contig U35_1672 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g45180.1	540	2e-83	protein\|expressed protein
Brachypodium v1_2	Bradi1g13430.1	426	1e-57
Arabidopsis v10	None