barSeed - Barley Seed Development Database

Probe CUST_5513_PI390587928

Source Contig U35_14847

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5513_PI390587928	Hv_44K_v2	TGTGAATGAGTGGTAGTTGGATTAATTGGCAAACTCAAACTTCTCTCATCTGAGTTCAGA	805	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359368	1072	2e-24	745 - 804	100	60 / 60	plus	ABC02318 ABC02324 ABC14241
Harvest21	ABC02318	1115	3e-25	771 - 830	100	60 / 60	plus	ABC02318
Harvest35	U35_14847	1168	3e-25	806 - 865	100	60 / 60	plus

Contig Sequence (1168 bp)

>U35_14847 1168 Hv_44K_v2
ATCCCACACAACGCACCCGCTCGCCCCACCTACCCCTCGGCCTCTCCCTCCCCAGATCGA
CCGACCCCCCCTCGTTCCGTCTCTCCCACCGACACCCAGCCCCACGCGCTCCCTCCTCTC
GCCTCCCTCCGATCCGTGGTGGACTTCCCGGGCTTCGAGGCGCACCTGATGGACTTCCCG
GACGCGGCGGAGATGCACCCGCACGCGGACGCGGGCGAGCGGCTGCACGACGCGGAGATC
CGGTTCCGCGGCGAGATGCAGGGCCCTGAGAGCGTCGCCTTCGACCCGTGCGGCCGCGTG
CCGTACACGGGCGTTGCCGACGGCAGGGTCCTCGTCTGGGACGGCGTCCGGAAACAAGGG
GAGGGCGATCGGCGTCGGGATGCTGAGGCGGCGGCTGACCTCCCTTCTTCTCCGATCCCC
GTGCTCCTCCTCCGTTGCTTCGCCCTACCACCAGCAGCAGCACCGCCTCCTCCACCCCAC
CCACGCCGAGTGACAACTCTGGCTTCAGCAGAGCAGCACAACTGCCTGCAGCTCAAGATG
AAGTATGTTGAGTTCATTGTTAGCACTCCTAGAATTCTTGATGCTGTGTTGGCGACGAAC
GAATATAAGCATCTGGAGGCAAGTTGTCCTATGGGGCAGAAAGGGTTGAAGGGTTTTTGA
TCTGAGTCACTCATGTCTTTTGAAGTCAGCGAGGGATCCCCTTATTTCCTCTCTTGCTAC
TTCTGGTTCATATATTGCATAAAATTCGGAGATTTCACTTGATACAAGTGGAACATCTGG
AGTTTTGTGCGAATATTTCCTATCATGTGAATGAGTGGTAGTTGGATTAATTGGCAAACT
CAAACTTCTCTCATCTGAGTTCAGAAACATTTGTCGCTTCAAGATTTCCGCCATGGATTG
CTTGTTTTTGTGCCTTGTTTCTATTCTTGATCTGTATCTTGTAGCTCTTAAAAATATGGT
TGTTTCTTCTACAGGACCTCTAGGCCTAAGAAAGTTGAAGTGCGAAGTCTTGAAGCCAAT
TGTGTGAAGCTCTACTTATCTAAGAATGCATATTATATATTGTAATAATAGGCATATCTG
CTTTGTAACAGATTGGAAAAATTGTAATATTCTACCTTCGTGTTAATTTGATTAATTTCA
CATGTCCTTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_14847 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None