- Probe CUST_5369_PI390587928
- Source Contig U35_32198
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_5369_PI390587928 | Hv_44K_v2 | ACATACTGAAACCCAGTTTTTGGCGCATGGTCCGTGAGATACTCAAGTTCAGGAACAATG | 395 | GeneList: None MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.942 | 0.787 | 1.569 | 0.569 | 1.340 | 1.340 |
| Raw | 2.858 | 3.127 | 10.928 | 3.349 | 4.264 | 4.444 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_63588.6 | 2876 | 7e-23 | 355 - 414 | 98 | 59 / 60 | plus | ABC09600 ABC09601 ABC15584 |
| Harvest35 | U35_32198 | 481 | 3e-25 | 396 - 455 | 100 | 60 / 60 | plus |
Contig Sequence (481 bp)
>U35_32198 481 Hv_44K_v2 AGAGAGCAGAGAGCAGAGCGGAGCATAGACACCGAGAAGAATGAGGGTGGCGGTGGTTGG CGGCGGGGTGAGCGGGCTGGCGGCGGCGCATGAGCTCACCGCCAGCGGGGGAGACGGCGT GCGAGTGACCCTGTACGAGGAGGAGGCCAGCCTCGGCGGGCACGCCAGGACGGTGGCCGT CGATGACGGCGCCGGCTGCGTCAAGCTCGACCTCGGCTTCATGGTCTTCAACCAGGTTAC ATATCCGCGAATGATGGAATGGTTAGAAGGACTCGGGGTTGAGATGGAGAGGTCAGACAT GTCTTTCTCTGTGAGCACACAATCTAAAGGAGGCGGTGGAGGATGTGAGTGGGGAAATGG TAACGGTATATCGAGCCTCTTGGCGCANAAAACTAACATACTGAAACCCAGTTTTTGGCG CATGGTCCGTGAGATACTCAAGTTCAGGAACAATGCTCTGACGTACCTGGAGGACCATGA A
Homology of Contig U35_32198 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |