- Probe CUST_5155_PI390587928
- Source Contig U35_13761
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_5155_PI390587928 | Hv_44K_v2 | CTCAGTTGTTGTGTAGTACTGCTCGTTGTTGTGCAAATCCAGCAAAGTTGTTTCAAAAAA | 512 | GeneList: darkgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.807 | 1.438 | 3.042 | 1.952 | 0.621 | 0.474 |
| Raw | 2785.813 | 7901.017 | 14527.867 | 14311.050 | 1657.291 | 1352.999 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_53340.1 | 1919 | 1e-22 | 1468 - 1523 | 100 | 56 / 56 | plus | |
| Harvest21 | ABC31055 | 227 | 3e-25 | 157 - 216 | 100 | 60 / 60 | plus | ABC31055 |
| Harvest21 | ABC01225 | 688 | 3e-25 | 62 - 121 | 100 | 60 / 60 | minus | ABC01225 |
| Harvest21 | ABC01232 | 600 | 1e-23 | 513 - 573 | 98 | 60 / 61 | plus | |
| Harvest21 | ABC01242 | 1751 | 2e-22 | 402 - 456 | 100 | 55 / 55 | minus | ABC01242 |
| Harvest21 | ABC01237 | 1647 | 2e-21 | 1155 - 1210 | 98 | 55 / 56 | plus | ABC01237 |
| Harvest21 | ABC01235 | 564 | 2e-21 | 478 - 533 | 98 | 55 / 56 | plus | ABC01235 |
| Harvest35 | U35_13761 | 585 | 3e-25 | 513 - 572 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_13888 | 1077 | 2e-22 | 617 - 671 | 100 | 55 / 55 | plus | |
| Harvest35 | U35_40587 | 598 | 2e-21 | 20 - 75 | 98 | 55 / 56 | minus | |
| Harvest35 | U35_40570 | 621 | 2e-21 | 20 - 75 | 98 | 55 / 56 | minus |
Contig Sequence (585 bp)
>U35_13761 585 Hv_44K_v2 CCGTCTTCTCCGCCACCGACGCCAAGAGGAACGCCAGGGACTCCCACGTTCCCATCCTCG CCCCGCTGCCCATCGGGTTCGCCGTGTTCCTGGTCCACCTGGCCACCATCCCCATCACCG GCACCGGCATCAACCCGGCGAGGAGCCTCGGCGCGGCCATCATCTACAACAGGGAGCACG CCTGGTCAGACCACTGGATCTTCTGGGTCGGCCCCTTCATCGGCGCCGCGCTGGCCGCCA TCTACCACCAGGTGGTCATCAGAGCGATCCCATTCAAGACCAAGTCCTAAGCTGCTGCTA CAAAGAAAGATGCCATCCCAACCCGAAGAGCAAACTGCGTGTTCTGAGTGAATTTCTTTC TGATGGGGGCGGCCCTCTCTTCCCATCGTCCGTGTTACCGTGGAATTCCAATTTGTCTTC CAAGTTTGATGTACTGCTCTTGCTCTTGCTCTTGCTCTTGCTCTGTATTCACCTGAACCC AGACAGAGGACTTGTATGTAATCTCATCAGTGCTCAGTTGTTGTGTAGTACTGCTCGTTG TTGTGCAAATCCAGCAAAGTTGTTTCAAAAAAAAAAAAAAAAAAA
Homology of Contig U35_13761 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os04g47220.1 | 289 | 8e-57 | protein|aquaporin protein, putative, expressed |
| Brachypodium v1_2 | Bradi5g18170.1 | 289 | 4e-56 | |
| Arabidopsis v10 | AT4G23400.1 | 287 | 3e-56 | | Symbols: PIP1D, PIP1;5 | plasma membrane intrinsic protein 1;5 | chr4:12220792-12222155 FORWARD LENGTH=287 |