barSeed - Barley Seed Development Database

Probe CUST_5076_PI390587928

Source Contig U35_14471

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5076_PI390587928	Hv_44K_v2	TCTGATCTGTATGGCGTTTTCTTGTTGGTGTCGCGAATAAGGCAATGAATAAGCTTGCGC	944	GeneList: yellowgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.883	2.438	1.671	1.690	0.739	1.051
Raw	1154.419	5256.133	2936.860	4959.220	698.728	1110.791

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_18718.1	1026	2e-24	776 - 835	100	60 / 60	plus	ABC01589 ABC01597 ABC02975 ABC02976 ABC40307
JLOC1	JLOC1_12958.1	1221	8e-25	845 - 904	100	60 / 60	plus
Harvest21	ABC01596	1311	3e-25	308 - 367	100	60 / 60	minus
Harvest21	ABC01590	1130	3e-25	768 - 827	100	60 / 60	plus
Harvest21	ABC01589	375	1e-23	156 - 215	98	59 / 60	minus	ABC01589
Harvest21	ABC40669	414	6e-22	51 - 107	98	56 / 57	minus
Harvest21	ABC01597	932	2e-21	137 - 189	100	53 / 53	minus	ABC01597
Harvest35	U35_14472	1152	3e-25	775 - 834	100	60 / 60	plus
Harvest35	U35_14471	1057	3e-25	945 - 1004	100	60 / 60	plus

Contig Sequence (1057 bp)

>U35_14471 1057 Hv_44K_v2
GCTGACCGCACACCCCGATCTCTCGCTCTCTCGCGTGTAGCAACCAAGGGGAAAAAATGG
CGCCGGTGAAGGTGTTCGGGCCGGCCATGTCGACGAACGTGGCCCGGGTGCTGGTGTGCC
TGGAGGAGGTCGGCGCCGAGTACGAGGTCGTCGACATCGATTTCAAGGCCATGGAGCACA
AGAGCCCCGAGCATCTCGTCAGAAACCCGTTCGGCCAGATCCCTGCCTTCCAGGATGGAG
ATCTGCTTCTCTTCGGTACGAATAATTTACCCTTTCCAGTTAAATTTGTCCGTATCAAAT
ACTCCTACTTGCTCGACGTCTGTTTCTCGGCACAGAATGGGACCAACCAGTAAAGCGAAT
GCTTCCATTTTGTTTCCGGTGCTGCTCTGTGTCGATCCAAATATCCTCTCAAATCCTCAA
AAACATTGTGTTCTTGCTCCGTCTTCAGAGTCACGCGCAATTGCGAAGTACGTGCTGCGC
AAGTACAAGACGGACGAGGTCGACCTTCTAAGAGAAGGCAACCTGAAGGAAGCAGCCATG
GTGGACGTATGGACGGAGGTGGACGCACACACCTACAACCCGGCGCTGTCGCCGATCGTG
TACGAGTGCCTCATCAACCCGCTCATGCGCGGCCTGCCGACCAACCAGACGGTGGTGGAC
GAGAGCCTGGAGAAGCTCAAGAAGGTGCTGGAGGTCTACGAGGCGCGCCTCTCCCAGCAC
AAGTACCTCGCCGGGGACTTCGTCAGCTTCGCGGACCTCAACCACTTCCCCTACACCTTC
TACTTCATGGCCACGCCGCACGCCGCGCTCTTCGACTCGTACCCGCACGTCAAGGCATGG
TGGGAGAGCCTCATGGCCAGGCCGGCCATCAAGAAGCTCGCCGCTCAGATGGTTCCCAAG
AAGCCGTGATCTGCTTAGGAGGGGTTTCGCGTCCGAGGATAAGATCTGATCTGTATGGCG
TTTTCTTGTTGGTGTCGCGAATAAGGCAATGAATAAGCTTGCGCGGCTGGGATTGCACCA
GCGTGCAGTTTTTGTGCTTGCCAAAAAAAAAAAAAAA

Homology of Contig U35_14471 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g27360.1	220	2e-86	protein\|glutathione S-transferase, putative, expressed
Brachypodium v1_2	Bradi2g13110.1	220	8e-96
Arabidopsis v10	None