barSeed - Barley Seed Development Database

Probe CUST_5075_PI390587928

Source Contig U35_14472

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5075_PI390587928	Hv_44K_v2	GTGTTTGTATGTCTTTCTAGTCGAAGATGTAACCATGGTTTCTAGTTCCCGTATTAAAAA	955	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_18718.1	1026	3e-22	957 - 1015	98	58 / 59	plus	ABC01589 ABC01597 ABC02975 ABC02976 ABC40307
JLOC1	JLOC1_12958.1	1221	1e-22	1026 - 1084	98	58 / 59	plus
Harvest21	ABC01596	1311	1e-23	126 - 186	98	60 / 61	minus
Harvest35	U35_14472	1152	3e-25	956 - 1015	100	60 / 60	plus

Contig Sequence (1152 bp)

>U35_14472 1152 Hv_44K_v2
CACGCGTCCGCAACACACAGATAACTGACCAGCACACCCCGATCTCTCGCTCTCTCGCGT
GTAGCAACCAAGGGAAAAAATGGCGCCGGTGAAGGTGTTCGGGCCGGCCATGTCGACGAA
CGTGGCCCGGGTGCTGGTGTGCCTGGAGGAGGTCGGCGCCGAGTACGAGGTCGTCGACAT
CGATTTCAAGGCCATGGAGCACAAGAGCCCCGAGCATCTCGTCAGAAACCCGTTCGGCCA
GATCCCTGCCTTCCAGGATGGAGATCTGCTTCTCTTCGAGTCACGCGCAATTGCGAAGTA
CGTGCTGCGCAAGTACAAGACGGACGAGGTCGACCTTCTAAGAGAAGGCAACCTGAAGGA
AGCAGCCATGGTGGACGTATGGACGGAGGTGGACGCGCACACCTACAACCCGGCGCTGTC
GCCGATCGTGTACGAGTGCCTCATCAACCCGCTCATGCGCGGCCTGCCGACCAACCAGAC
GGTGGTGGACGAGAGCCTGGAGAAGCTCAAGAAGGTGCTGGAGGTCTACGAGGCGCGCCT
CTCCCAGCACAAGTACCTCGCCGGGGACTTCGTCAGCTTCGCGGACCTCAACCACTTCCC
CTACACCTTCTACTTCATGGCCACGCCGCACGCCGCGCTCTTCGACTCGTACCCGCACGT
CAAGGCATGGTGGGAGAGCCTCATGGCCAGGCCGGCCATCAAGAAGCTCGCCGCTCAGAT
GGTTCCCAAGAAGCCGTGATCTGCTTAGGAGGGGTTTCGCGTCCGAGGATAAGATCTGAT
CTGTATGGCGTTTTCTTGTTGGTGTCGCGAATAAGGCAATGAATAAGCTTGCGCGGCTGG
GATTGCACCAGCGTGCAGTTTTTGTGCTTGCCAATGTGTGGTCGTGGAAAGCTCTTGAGA
TGGGACAATATCTTATAGCGCTTTCAGTTTTGTTGTTCGTCAAGTCTTAGATAAGGTGTT
TGTATGTCTTTCTAGTCGAAGATGTAACCATGGTTTCTAGTTCCCGTATTAAAAAAAAAA
AATACTTTGCACCCGTTCGGATTTTAAAAAAAAAAAAAAAAAAAAACGTTTTTTATCGCA
ACTTTAGTTAACACGAGTTGCAATTATTAAAACATGTAACCTCATCTCAAATGTTTTTAA
TAGAAATTTTAC

Homology of Contig U35_14472 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g27360.1	220	1e-131	protein\|glutathione S-transferase, putative, expressed
Brachypodium v1_2	Bradi2g13110.1	220	6e-145
Arabidopsis v10	AT3G62760.1	219	4e-68	\| Symbols: ATGSTF13 \| Glutathione S-transferase family protein \| chr3:23217425-23218246 REVERSE LENGTH=219