- Probe CUST_5024_PI390587928
- Source Contig U35_528
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_5024_PI390587928 | Hv_44K_v2 | ATTGGAGGATTCGTGCCTTGGGCGAAAATTCTTCCAGCATTTTCCTTTTACGTTTGGTTG | 520 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_11890.6 | 1495 | 2e-24 | 1194 - 1253 | 100 | 60 / 60 | plus | ABC01646 ABC01648 ABC37056 |
| MLOC | MLOC_11890.7 | 1635 | 2e-24 | 1142 - 1201 | 100 | 60 / 60 | plus | ABC01646 ABC01648 ABC37056 |
| MLOC | MLOC_11890.5 | 1266 | 2e-24 | 1075 - 1134 | 100 | 60 / 60 | plus | ABC01646 ABC01648 ABC37056 |
| MLOC | MLOC_11890.2 | 4011 | 2e-24 | 3141 - 3200 | 100 | 60 / 60 | plus | ABC37056 |
| MLOC | MLOC_11890.3 | 2152 | 2e-24 | 1890 - 1949 | 100 | 60 / 60 | plus | ABC01646 ABC01648 ABC37056 |
| MLOC | MLOC_11890.8 | 1368 | 2e-24 | 855 - 914 | 100 | 60 / 60 | plus | ABC01648 ABC37056 |
| MLOC | MLOC_11890.1 | 2305 | 2e-24 | 1682 - 1741 | 100 | 60 / 60 | plus | ABC01646 ABC01648 ABC37056 |
| JLOC1 | JLOC1_7929.2 | 1703 | 8e-25 | 1052 - 1111 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_7929.1 | 2044 | 8e-25 | 1393 - 1452 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01655 | 699 | 3e-25 | 386 - 445 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01653 | 1639 | 3e-25 | 1300 - 1359 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC47610 | 268 | 1e-23 | 166 - 225 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC38192 | 560 | 1e-23 | 258 - 317 | 98 | 59 / 60 | minus | |
| Harvest21 | ABC37056 | 541 | 1e-23 | 276 - 335 | 98 | 59 / 60 | minus | ABC37056 |
| Harvest21 | ABC01651 | 854 | 1e-23 | 521 - 580 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_531 | 1710 | 3e-25 | 1345 - 1404 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_528 | 580 | 3e-25 | 521 - 580 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_526 | 1042 | 3e-25 | 728 - 787 | 100 | 60 / 60 | plus |
Contig Sequence (580 bp)
>U35_528 580 Hv_44K_v2 CCCTCCCTGCCCTCAGTCGTCAGCCGGGTTCCTCCATCCCTCCCGCCATGGCGCTCCTCA CCGATCTCCTCAACCTCGACCTCTCCGGCTCCACGGAGAAGATCATCGCCGAGTACATAT GGATCGGCGGATCTGGCATGGATCTCAGGAGCAAGGCCAGGACCCTCCCCGGCCCGGTCA CCGACCCCAGCAAGCTGCCCAAGTGGAACTACGACGGCTCCAGCACCGGCCAGGCCCCGG GCGAGGACAGCGAGGTCATCCTGTACCCACAGGCCATCTTCAAGGACCCGTTCAGGAAGG GAAACAACATCCTTGTCGTGTGGCAAACCGTGGCGCGTCGGTGCGCGTGGGCCGGGAGAC GGAGCAGAACGGCAAGGGCTACTTCGAGGACCGCCGGCCGGCGTCCAACATGGACCCCTA CGTGGTCACCTCCATGATCGCCGAGACCACCATCCTGTGGAAGCCCTGAAGCTCCGATCG CCGTGTGATGGACCGTCGGTGATGGGGTCCGGTGGTGGCCATTGGAGGATTCGTGCCTTG GGCGAAAATTCTTCCAGCATTTTCCTTTTACGTTTGGTTG
Homology of Contig U35_528 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |