barSeed - Barley Seed Development Database

Probe CUST_4775_PI390587928

Source Contig U35_4049

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4775_PI390587928	Hv_44K_v2	AAACCCGTTGTAGTATATATTTGCTGCTTCTTGGTTTGCTAACTAGTTATGCTACTTTTG	1106	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_45112.1	1287	3e-21	1130 - 1187	98	57 / 58	plus	ABC03166 ABC03170 ABC09906 ABC09907 ABC21862
JLOC1	JLOC1_29277.1	1055	2e-21	898 - 955	98	57 / 58	plus
Harvest21	ABC09906	1014	3e-25	22 - 81	100	60 / 60	minus	ABC09906
Harvest35	U35_4049	1187	3e-25	1107 - 1166	100	60 / 60	plus

Contig Sequence (1187 bp)

>U35_4049 1187 Hv_44K_v2
GACACCGGTCAGGCAACCACCTCCTCCCTACTTTTCTCCTCCTTTTCTTCATTCTCCACC
CTTCATTTCTCCTTCGTCGTTCTTTCCTCCTCCCCATCAAGAAGGGGATCTCCGCTTGCT
TGATTTTCATTTGGGAAGAGGGAAGTTATTTTTTGGTCTCAGAGTTGAAAGCGAGGAGAA
GGAATGGGCGGACGTGTGGATCACGAGTACTCCTACCTGTTCAAGATGGTGCTCATCGGG
GATAGCGGCGTCGGCAAGTCCAACATCCTCTCCCGATTCACCCGCAACCACTTCTCCCTC
GACTCCAAGTCCACCATCGGCGTGGAGTTCGCCACCAAGTCCTTGCAGATGGAGGGAAAA
ACAATAAAGGCTCAGATCTGGGACACAGCTGGTCAGGAGAGGTATCGTGCAATTACAAGC
GCATATTACCGGGGCGCTGTAGGGGCTCTCCTTGTATATGACATCACAAAGAAGCAGAGC
TTTGACAATGTTAATAGGTGGCTGCATGAGCTCCGTGATCACGCTGACTCCAGCATTGTC
ATCATGATGGTCGGTAACAAGTCCGACCTGACACATCTAAGGGCTGTCTCTGAGGATCAA
GGCAAGGCACTGGCAGAAAAGGAGGGCCTGTTTTTCCTTGAGACATCAGCTATGGAGGCT
GTGAATGTGGTAGAAGCGTTTCAGACTATCATCACAGAGGTCTATGGTATTGTCAACAAG
AAAGCACTGGCCGCCAAAGAAGCAGCAGCAGCAGCTGTTCCATTGCCTTCCCAGGGTAAA
ACCATCAGCGTTGACAGTACTGTGGGCAATTCAAAGAGGGCATGCTGCAATACTTGAAAT
GTAGGCATCATACTGTAGAGAATCTGGAGCGGGGATATCAGCAGAGCAGCTTAGTTGAAC
TGGTGGGAAGGCATTTCTATTCTTTTTGTTTTCTGTTGAGCGAACATCCTGGAGTAGGCT
GCTGTAGGGGCAGTTTGTTCAGCATTTCTGGAAGTTAGATGTGTGTATTAGGATTGTGTT
CCATTTTCCACTATGAAAGTTACATGATACTACAATATATGTCGGATTATACATCATATT
TGATAGGACCCAAAACAAGTTTTGTTAAACCCGTTGTAGTATATATTTGCTGCTTCTTGG
TTTGCTAACTAGTTATGCTACTTTTGTTCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_4049 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g20050.1	218	1e-129	protein\|ras-related protein, putative, expressed
Brachypodium v1_2	Bradi2g30500.1	218	1e-131
Arabidopsis v10	AT3G46830.1	217	2e-104	\| Symbols: ATRAB11A, ATRABA2C, ATRAB-A2C, RAB-A2C, RABA2c \| RAB GTPase homolog A2C \| chr3:17246699-17248362 REVERSE LENGTH=217