barSeed - Barley Seed Development Database

Probe CUST_4691_PI390587928

Source Contig U35_1744

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4691_PI390587928	Hv_44K_v2	ACCGACTCTTTTTGACAACAAAGGCTGATTATAATGTATACGGCTTATGATTTATACCGC	1457	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70104.2	2457	7e-23	45 - 104	98	59 / 60	minus	ABC04674 ABC04676 ABC15844
MLOC	MLOC_70104.1	3295	7e-23	1474 - 1533	98	59 / 60	minus	ABC04674 ABC04676 ABC04677 ABC12471 ABC15844
JLOC1	JLOC1_46504.1	1924	4e-23	1765 - 1824	98	59 / 60	plus
Harvest21	ABC04674	1560	1e-23	1458 - 1517	98	59 / 60	plus	ABC04674
Harvest35	U35_1744	1560	3e-25	1458 - 1517	100	60 / 60	plus

Contig Sequence (1560 bp)

>U35_1744 1560 Hv_44K_v2
GGCTGATCGTCACCGAGGCCTGCGCCGTCGACAAGGTGCGCGCCTTCGCCGCCGAGCGCG
GCATCCCCGTGGTCACCGTCGACGGCCCGGCCTCCGAATCCGACGGCTGCCTCGCGTTCA
ACGAGACCCTGCTGCCCGAGGAGCCGCTCGCCGCCGACGAGGCGGTCGACCCCGACGACG
TGGTGGCCCTCCCCTACTCGTCCGGCACCACGGGCCTCCCCAAGGGCGTCATGCTCACCC
ACCGCAGCCTCGTCACCAGCGTCGCCCAGCAGGTGGACGGGGAGAACCCGAACTTGTACT
TCGGGGAGGAGGACGTGGTGCTGTGCGTGCTGCCGCTGTTCCACATCTACTCGCTCAACT
CGGTGCTGCTGGCGGGGCTGCGGGCCGGGTGCGCGATCGTGATCATGCGCAAGTTCGACC
ACGGCGTGCTGGTGCGCCTGGTGCGCGCGCACGGGGTCACCGTGGCGCCCTTCGTGCCGC
CCATCGTCGTCGAGATCGCCAAGAGCGACCGGGTGACCGCCGCCGACCTCGCCTCCATCC
GCATGGTCATGTCCGGCGCCGCGCCCATGGGCAAGGACCTCCAGGACGCCTTCATGGCCA
AGATCCCCAACGCCGTGCTCGGACAGGGGTACGGGATGACGGAGGCCGGGCCGGTGCTGT
CCATGTGCCTGGCGTTCGCCAAGGAGCCGTTCGCCGTCAAGTCGGGGTCCTGCGGCACGG
TGGTGCGGAACGCGGAGCTCAAGATCGTCGACCCCGACACCGGCGCCTCCCTCGCCCGCA
ACCTGCCCGGGGAGATCTGCATCCGCGGCAAGCAGATCATGAAAGGTTACCTAAATGATC
CGGAGGCCACAAAGAACACCATTGACAAGGATGGTTGGTTGCACACTGGAGACATCGGTT
ATGTCGATGATGATGACGAGATCTTCATCGTCGACAGGCTCAAAGAGATAATCAAATACA
AGGGATTCCAAGTACCTCCTGCGGAACTCGAAGCCCTTCTCATTACACACGCTGAAATCA
AAGATGCTGCTGTTGTATCGATGCAAGATGAACTTACTGGTGAAGTACCAGTTGCATTCA
TTGTGCGGATTGAAGGCTCTGAGATCAGCGAGAGCGAGATCAAGCAGTTTGTTGCAAAAG
AGGTTGTTTTCTACAAAAGGATCCACAAAGTTTTCTTTGCGGACTCGGTTCCGAAGAGTC
CTGCCGGCAAGATCCTCAGGAAGGACCTGAGAGCAAAGCTCGCTGCAGGCATCCCAGGCA
GTGGAAGCACAGCGTCTAAGAGCTGAGTCCCATCTTACACACACAACTCTGTCCAAAATC
ATGTAATGTTCTCAATGAAATGGCAACAATATTATTACATATAGAAGGCCTGGCACATGT
TCAATTCTTTTAATTGGCTAAGTCACATAATTTGTTTGTTTGTTCGTCCGGTGGTGTGTA
ACATGTCATGTATAGATACCGACTCTTTTTGACAACAAAGGCTGATTATAATGTATACGG
CTTATGATTTATACCGCAAGTTGAATTAAACTCATTTGTTCCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_1744 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g44620.1	560	protein\|AMP-binding domain containing protein, expressed
Brachypodium v1_2	Bradi1g31320.1	573
Arabidopsis v10	AT1G51680.1	561	\| Symbols: 4CL1, 4CL.1, AT4CL1 \| 4-coumarate:CoA ligase 1 \| chr1:19159007-19161464 REVERSE LENGTH=561