barSeed - Barley Seed Development Database

Probe CUST_4690_PI390587928

Source Contig U35_1745

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4690_PI390587928	Hv_44K_v2	TCTCCCGCCGGTGCGCGGCGGGCCTGCGCAAGCTCGGCATCGGGAAGGGCGACGTGGTCA	281	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70104.2	2457	2e-24	2291 - 2350	100	60 / 60	minus	ABC04674 ABC04676 ABC15844
MLOC	MLOC_70104.1	3295	2e-24	3126 - 3185	100	60 / 60	minus	ABC04674 ABC04676 ABC04677 ABC12471 ABC15844
JLOC1	JLOC1_46504.1	1924	8e-25	113 - 172	100	60 / 60	plus
Harvest21	ABC04675	581	3e-25	282 - 341	100	60 / 60	plus
Harvest35	U35_1745	581	3e-25	282 - 341	100	60 / 60	plus

Contig Sequence (581 bp)

>U35_1745 581 Hv_44K_v2
GAGCAGAGCANANCACGCGCACGGGATCCCCTCCCCCATTTTCTCGCCCCCACGCCACCA
ATTCCTTCCCCCCGGGCCGGCGCCGGCGGCGAGATCCATGGGCTCCGTGGCTGCGGAGGC
GCCCGAGACGGTGTTCCGGTCCAGGCTCCCAGACATCGAGATCCCGGCGCACCTCACGCT
GCAGGACTACTGCTTCGAGCGGCTGCCGGAGGTGGCCGCCCGGCCCTGCCTCATCGACGG
GCAGACGGGCGCCGTGCACACCTACGCGGACGTCTCGCAGCTCTCCCGCCGGTGCGCGGC
GGGCCTGCGCAAGCTCGGCATCGGGAAGGGCGACGTGGTCATGAACCTGCTCCGCAACTG
CCCGGAGTTCGCCTTCGTGTTCCTCGGCGCGGCCCGGCTCGGCGCCGCCACCACCACGGC
CAACCCGTTCTGCACGCCGCACGAGATCCACCGCCAGGCGAGCGCCGCCGGGGCGCGGCT
GATCGTCACCGAGGCCTGCGCCGTCGACAAGGTGCGCGCCTTCGCCGCCGAGCGCGGCAT
CCCCGTGGTCACCGTCGACGGCCCGGCCTCCGAATCCGACG

Homology of Contig U35_1745 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g44620.2	446	1e-72	protein\|AMP-binding domain containing protein, expressed
Brachypodium v1_2	Bradi1g31320.1	573	5e-68
Arabidopsis v10	None