barSeed - Barley Seed Development Database

Probe CUST_4658_PI390587928

Source Contig U35_1777

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4658_PI390587928	Hv_44K_v2	TCGCTATGCTACTCCTTGTTCATTTATTCACACTGTTTATGTGTAAGTGACCTTTGTGGA	670	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367269	1415	9e-22	1215 - 1269	100	55 / 55	plus	ABC04541 ABC04542 ABC04543
MLOC	MLOC_22863.1	1441	9e-22	1363 - 1417	100	55 / 55	plus	ABC04541 ABC04542 ABC04543
MLOC	MLOC_22863.3	1349	9e-22	1272 - 1326	100	55 / 55	plus	ABC04541 ABC04542 ABC04543
MLOC	MLOC_22863.4	1259	9e-22	1182 - 1236	100	55 / 55	plus	ABC04541 ABC04542 ABC04543
JLOC1	JLOC1_15828.1	1411	5e-22	1185 - 1239	100	55 / 55	plus
Harvest21	ABC04543	743	3e-25	14 - 73	100	60 / 60	minus	ABC04543
Harvest35	U35_1777	743	3e-25	671 - 730	100	60 / 60	plus
Harvest35	U35_1775	940	8e-21	889 - 940	100	52 / 52	plus

Contig Sequence (743 bp)

>U35_1777 743 Hv_44K_v2
TATGCCATTGCACTGGCACTGCTTGATGAGGGCAAAGTTGTCTTAGGTGTGTTGGGATGT
CCAAATCTTCCTTTGACATCAATAAGTAACCTCAGTGATAGCTCATCAAGAGATCAAACC
GGGGCCCTCTTTTCAGCTGCAATCGGTTGTGGTGCTGAAGAGCAGTCTTTGGATGGCTCT
CCACCACAAAAGATTAGTGTTTGTACCATCGACAATCCAGTCAATGCCTCGTTCTTTGAA
TCCTATGAAGGAGCACACACGATGCGTGATTTTACTGGCTCCGTAGCGGAGAAACTTGGT
GTCCAAGCTCCTCCAGTCAGAATAGATAGCCAAGCAAAATATGGTGCTCTGGCCCGTGGA
GATGGTGCCATTTACTGGCGTTTCCCACACGAGGGTTACAGGGAAACAATATGGGATCAT
GCAGCTGGCTCAATTGTCGTCACGGAAGCTGGAGGTGTAGTTAAAGATGCCTCAGGAAAC
GATCTCGATTTCTCGAAAGGAAGATTTCTTGATCGTGACACAGGCATCATTGCTACAAAT
AAACAGTTGATGCCATCAGTCCTGAAGTCTGTCCAGGAGGCAATCAAGGAGAAAAAACAG
GCCTCTTCTCCATTGTAAAAGGTTTTTTAACCTTCCCTGTTACTGAAGTTGGATTGGTCC
AAAATAATGATCGCTATGCTACTCCTTGTTCATTTATTCACACTGTTTATGTGTAAGTGA
CCTTTGTGGAAAAAAATACAACC

Homology of Contig U35_1777 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g08280.1	359	2e-112	protein\|inositol-1-monophosphatase, putative, expressed
Brachypodium v1_2	Bradi4g40860.1	425	2e-115
Arabidopsis v10	AT5G63980.1	407	5e-82	\| Symbols: SAL1, ALX8, ATSAL1, HOS2, FRY1, RON1 \| Inositol monophosphatase family protein \| chr5:25609840-25611802 FORWARD LENGTH=407