barSeed - Barley Seed Development Database

Probe CUST_42_PI390587928

Source Contig U35_7829

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42_PI390587928	Hv_44K_v2	ACACGCCACACGTGAGGGAGCCAAGCAAGGCGGATAGACGTACACACAACCATCAAGATC	84	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358405	1090	2e-24	9 - 68	100	60 / 60	plus	ABC05842 ABC09250 ABC09252 ABC14337 ABC40938 ABC53019
MLOC	MLOC_23496.1	533	2e-24	205 - 264	100	60 / 60	minus	ABC09250 ABC09252 ABC53019
JLOC1	JLOC1_16234.1	499	8e-25	204 - 263	100	60 / 60	minus
Harvest21	ABC16014	526	3e-25	85 - 144	100	60 / 60	plus
Harvest35	U35_7829	528	3e-25	85 - 144	100	60 / 60	plus

Contig Sequence (528 bp)

>U35_7829 528 Hv_44K_v2
GCGCCTACCTCCCCAAGAGAGCAGAGCACGAGGAGCCGCCTATATAAATCCGCCCGCCCT
TTCCTCCCCCCCAATCTAGCACGCACACGCCACACGTGAGGGAGCCAAGCAAGGCGGATA
GACGTACACACAACCATCAAGATCGGAGCGAGCGGCCATGGGGCGGTCGCCGTGCTGCGA
GAAGGCGCACACGAACAAGGGCGCGTGGACGAGGGAGGAGGACGAGCGGCTGGTGGCCCA
CGTCCGGGCGCACGGGGAGGGGTGCTGGCGCTCGCTGCCCAGCGCCGCCGGCCTGCTGCG
CTGCGGCAAGAGCTGCCGCCTCAGGTGGATCAACTACCTCCGCCCCGACCTCAAGCGCGG
CAACTTCAGCCGCGACGAGGACGAGCTCATCGTCAAGCTCCACAGCCTCCTCGGCAACAA
GTGGTCGCTCATCGCCGCGCGCCTGCCGGGGAGGACGGACAACGAGATCAAGAACTACTG
GAACACGCACATCCGGAGGAAGCTGCTCGGCAGGGGGATCGACCCCGT

Homology of Contig U35_7829 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g43550.1	244	1e-84	protein\|MYB family transcription factor, putative, expressed
Brachypodium v1_2	Bradi4g36460.1	240	3e-83
Arabidopsis v10	AT4G38620.1	282	5e-83	\| Symbols: ATMYB4, MYB4 \| myb domain protein 4 \| chr4:18053866-18054876 FORWARD LENGTH=282