barSeed - Barley Seed Development Database

Probe CUST_4273_PI390587928

Source Contig U35_19001

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4273_PI390587928	Hv_44K_v2	TCCAGAAGTGTACACCAGCTTTCCCGCTAAAAAATGACAAGAAGTGTACTCTGTTGCCTG	830	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.257	2.178	1.543	0.831	0.202	0.181
Raw	1461.809	3748.073	2357.803	2051.028	172.615	167.757

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67489.1	1910	7e-23	1834 - 1893	98	59 / 60	plus	ABC12316 ABC16415 ABC43123
JLOC1	JLOC1_44566.3	1816	4e-23	1527 - 1586	98	59 / 60	plus
JLOC1	JLOC1_44566.2	1918	4e-23	1629 - 1688	98	59 / 60	plus
JLOC1	JLOC1_44566.1	2036	4e-23	1747 - 1806	98	59 / 60	plus
Harvest35	U35_19001	940	3e-25	831 - 890	100	60 / 60	plus

Contig Sequence (940 bp)

>U35_19001 940 Hv_44K_v2
TATCGACGGAGCTCGGATTTTTAACGCCTCCGTGGCACTTGGAGTTCCTGTTCATAGACT
TGTGAGAGCTGCTGATTCAGTTTCGGTGTGCCTATCCAAAGGTTTAGGTGCTCCTGTTGG
ATCAGTAATTGTTGGTTCCAAGGCCTTCATATACAAGGCCAAAATTCTTAGGAAGACACT
AGGTGGTGGAATGAGGCAGGTAGGAATTCTCTGTGCTGCTGCCTATGTTGCGGTTCGCGA
CACCGTGGGCAAGCTCGCCGATGACCATAGGAAGGCCAAAGTTTTAGCAGATGGACTGAA
GAAAATTAAACAGTTTACAGTTGATTTAGCTTCAGTGGAGACCAATATGGTATTCTTTGA
TATCGCGGATCCACGCATAACACCTGACAAACTGTGTCAAGTCCTGGAACAGCGCAATGT
GCTTGCAATGCCAGCAAGCTCCAAGAGCGTCAGACTTGTCACTCACTACCAAATTTCAGA
CAGTGACGTCCAGTATACTTTGACATGTATCGAGAAAGCCGTGGAGGAAATCCTGTCAGG
CAATGCTAAATTCGAGCACCTGACAAACGGCACCACCACCAACTCGTATGGGCACTAGGC
CACGGCACCTCCTTTAGAGCCCACCTATGGCTATGGGCTATGGACGGACTGCGGCATCCG
AGCAGCTTGTTTGTGGCCGTGGGCTTTGTAGTACCAGTAACAACTTTGCAGAATAATGTG
TGGCGTTTGGGCCGCCGGAAGGCCCCTGAATGGAATGCAATGTCGCGATTTGATTATCTT
GTTCTTCAGCCCGGATACGGGGAGTGTTCGCCAGGCCGGCCCATCACATGTCCAGAAGTG
TACACCAGCTTTCCCGCTAAAAAATGACAAGAAGTGTACTCTGTTGCCTGTGGCCTGGCG
CCTTGTGAGTACTACTGTTGGCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_19001 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g43650.2	373	2e-117	protein\|L-allo-threonine aldolase, putative, expressed
Brachypodium v1_2	Bradi5g15710.1	373	5e-123
Arabidopsis v10	AT3G04520.1	355	1e-68	\| Symbols: THA2 \| threonine aldolase 2 \| chr3:1217397-1219571 REVERSE LENGTH=355